CI01000030_06143122_06149273 (FAM20CL)


Basic Information

Item Value
gene id CI01000030_06143122_06149273
gene name FAM20CL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6142954 ~ 6151252 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_06143122_06149273.mRNA
AGCACTTAATGAAACTCTTGAAAAGGCTTTAAGCAGCCTCCCACACTGTAAACAACTTTGCTTTAAACATTTGGCCTTCTGGCATTTCCCTTTTGATCAGTTTCATTTCAAAACTGTTACTTAGCAACCCGCACAAACATCAAAGACCATCCGCTGATGGACACAAAATGATAACTAATTATATATGCGTACATGCACTTCTGTGTGTCTGTCTATCTATCTATCTATCGATCTATCTATCATAGTTACGCCATACACTTCCCCTTCTGCTGTGTATCTGATTTCTTATTGCATGCCACGATTAGCAAACATGCAGATTTGATCACAAAAGCAGCAGGCGGTGTGTGGTGTTCTCCGGGTTATTCATCTGCTGGGGCGCGATTAGATGTGTGGTTAATGTGGGTGCATGTGTGCTTGAGAGATGCACATGCCAATCTGTTGCCATGGTGAGGAGGTCCCCCATCAGATATACAGTGTGAAATTATGAGACCCAAAAGAGCATTTGTGCACCTGTCTCACCTGATTCGAAATGGTCTAGTTAGTAGAATTTGCGTTTTACTCTAGTTAAAACGATTTTTATGTCAAAGCTTTATGACACTAGGGAATATTGGGGAAAAGAAGCTAAGAACAACATTTCAGAATGCTCTGCAACTTTTATATAATTTCTGTTTGTTCAGTCCATCCAATGATTTTTTTGCCACACTTTTTATATCAGGAATGCAATTTTTTATGTTTATAAAAATGGAAAATCAATTTGTTTTATAATAAATAAATAAATAAATAAATAAATAAATAGAATAATACAAAATAAAATATTAATATTTTATTTAATTTTCAATGATTTATTTTTATTTTAACATTCATATTTTTTATATATTACGTTTGAATATTTAATTTTTTGAAAATATATTTTTTATTAAGTTTAATTTAGATTAATATTAAATAAATTATTTTTATTAATATTAGCATTAACAACAAAGATTTTTTGACCAAATTTCTGTTTTTCTATTAGGATTTTTTTTTTTTTTTTATGTTTATAAAAAGGAAAACCATTATAATTTATTATAAAATATTATAGTACAAAATAAAATATTAATATTTTATTACATTTTTATTACATTATTTTTGTATTTTAATATTAATATATAATTAAAATATTAATAGTTGTTTTTTTATTTTATTTGGATAATTTTTGATAATATTAATTAAATTATTTTCATCAGTATTAATATTAGCGTTGTCCTGGCTGATTTGGGATACAGTTGGAATGGGATAATTTGTTATTAAATTGTTTCTTGTCTAATCTTGAAAAAAAAAAAAAATCCTCCCCACATCATTGTAGTTTTGCATTATATAAATGATAGAGCATTTGAAAAATTGACAAAAATGTATAAATAATGAATAAATAATATTAAATAAAAAATAATAATAGATAATTCGATATGAGTGTCAGCTATCTTTTTATAAGTAAAAAGTGAATTTATTATTTTCATGGCCAATCCCCCAAACATTCAGTATCACTGTAAAAACCTCTTTAAGATGCTCCTGGACTAAAAATGCAGCACATGGTCTCTTTCCCAATGTGAAAAAAAATGAAAAAATTTGGGTCGCAGGAGGCTAGAGGACAACTTTGGTAAAAAGTGGCACAGTTTACCCCATTCTCCCCTATCATTTAATACATGTTCTTAGTAGAGAATACACTACCACTCTGCTAGACGTTGCAGGGGGTAAAGTAAACACGTCCATTCAGATCAGCCTAACCTGGCACCTCTCCTCTGTAATGTTTGAGAGACACAGGGAGTGCAAGAGAGCAAACAGGGGAATGAAGGTCTAAAGGACAATGTGAGCTTCCTTTTAGTCCAGGCAGACAGAGACGAAAACACCTTAAACTGGAAGCCGGGTATGTTTTGCTTTATATTCTTTAATACGGACGACTGTAGATTTGAAATTAATTCTCTTTGCTATCTCATTTCAGTACAATGAGAGTATGCACACGTCGACGTTTACAGACTTTGCGTATGTGGCTATTAATTGTCTTCCTGAGTCTGCATTTGCTCGTGGTTTCACTTGTCCTGTCCATGTACCACACTTCTTGTGAGCCCCGCTCGCACCCTGACATCCAGACCTCCATCAGCTTCTTCATTCAGAATACATCTACTTCAGCAAACACAATGGCTGCTGTAGGAACTGTCACCCACAAAATGGAAATAGACAGTGCAGCAGATGACCTTTCCAAACTGGAGGCTCTGTTCTCCCACCCGCTGTATAATATGCTCACCCCACCTGTGCCTGATGGTGATTGGTTGCTAAAAGTCAGAACGAAAAGAAAAGAGGAAGAGCGTAGCACTCAGCAGTGGCTGAGTGCTAATGAGGATGGCTATGATCCTATCATCTGGAACGCCAGTGCCGAGACACATCCGCCTTGGCTCCGGTTTCACCTTGGTATATCTCGCTGGCAGATGTATCAGCACAAAGATCCCAGTCTGTCAGCGCTGACTCAGCAGCTGGCATCCCACCGCATTGTCAGTGCAGTGCAAAAATCAGGTGGGACGCAGCTGAAGTTGGTGATGTCATTTCGTAATTATGGAAAGGCGCTCTTCAAACCCATGAAACAGGAACGTCATGAGGAGACCAATGTGAATCTGTATTATTTCTCTGACTTTGAGAGGCACAATGCTGAAATCGCAGCCTTCCACCTGGACAGGATACTGGGTTTCAGAAGGGTGCCTCCAGTGGTTGGGAGGCTTATTAATGTAATAAAAGAGATCAAAGACATCACCACTGACCATAAACTGGCCACAACATTTTTCACTTCCCCAGTGGGGAATGCGTGTTTTTACGGCCAGTGTTCCTATTACTGCTCCACGGAGCATGCTATCTGTGGACGTCCCGTCATGATAGAGGGGTCTTTGGCTGCTATGCTGCCAGACCTGTCGTTGGCACAGCGCCGCTCATGGAAGAGCCCCTGGAGGCGGTCCTACAGCCGAAGCAAGCTGGCTCTGTGGGTGGAGTGGGAGACAAATAACAACTACTGTGTCTCAGTAAAAAAGTCTCCTCCCTACGACCGAGGCACTCGATTGGTGGATCTGATTGACATGAGCATTCTGGACTTCCTTATGAGTAACATGGATAGGCACCACTATGAAACATTTGAGAAGTTTGGCAATGACACATTTCTCATACACTTAGACAACGGAAGAGCGTTTGGACGTCACTCCAAAGATGAACCTTCTATTTTGGCTCCTCTTGTGCAGTGCTGCAGGGTCCGTCGTTCCACGTTGCTTCGTTTACGTCTGCTCTCTCTCCCGCTGTATCGGTTGAGTGATGTCATGCGTGCATCTTTGGCTCAGGATCCCCTTGCAGCGATGGCTCCTCTCCTTACTAAGCCACATCTTTCCGCTCTAGATCGTCGCCTAGCAACAGTCATTCAAACCATCCAGGACTGTCTGGAACAGCATCAACATCACAGTGATGTCATATATGATGACATCACTGATTACCCTTGGGCTTGATTATTTAGATCTATGTTGTGATGTATAGCCACACTGTAAACAATCAATTACACATTATATAGTTGTAAAATAATGTTAAATGAAGTGGATTATTGCCATCTGTGACCAGTACTTGATGCATGATTTGAGACAAAATTGAAGACAAAATGTTTGCAAGTAACATATAAA

Function

symbol description
fam20cl Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to colocalize with Golgi apparatus.

NR:

description
LOC100007251 protein, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_06143122_06149273.mRNA True 3680 mRNA 0.38 10 6142954 6151252

Neighbor

gene id symbol gene type direction distance location
CI01000030_06131710_06138371 NA coding downstream 4583 6131090 ~ 6138406 (-)
CI01000030_06107092_06109831 NA coding downstream 31978 6106653 ~ 6110976 (-)
CI01000030_06092897_06102203 NA coding downstream 40323 6092840 ~ 6102631 (-)
CI01000030_06079733_06090776 NA coding downstream 52178 6079691 ~ 6090776 (-)
CI01000030_06070218_06078371 VTG1 coding downstream 64576 6070142 ~ 6078378 (-)
CI01000030_06162749_06165879 NPTXRB coding upstream 10560 6161812 ~ 6166515 (-)
CI01000030_06168725_06172057 POLR3F coding upstream 17202 6168454 ~ 6172057 (-)
CI01000030_06184908_06193012 KAT14, CSRP2BP coding upstream 33361 6184613 ~ 6193012 (-)
CI01000030_06383887_06390119 PDGFA, PDGFAA coding upstream 232326 6383578 ~ 6390119 (-)
CI01000030_06405632_06428709 NA coding upstream 254316 6405568 ~ 6428709 (-)
G161352 NA non-coding downstream 23980 6114451 ~ 6118974 (-)
G161099 NA non-coding downstream 116938 6025636 ~ 6026016 (-)
G161097 NA non-coding downstream 121090 6021558 ~ 6021864 (-)
G161359 NA non-coding upstream 24334 6175586 ~ 6175946 (-)
G161375 NA non-coding upstream 29704 6180956 ~ 6181404 (-)
G161376 NA non-coding upstream 31015 6182267 ~ 6182496 (-)
G161377 NA non-coding upstream 42189 6193441 ~ 6193717 (-)
G161380 NA non-coding upstream 61979 6213231 ~ 6213574 (-)
G160949 NA other downstream 342528 5797297 ~ 5800426 (-)
G160712 NA other downstream 630880 5456960 ~ 5512074 (-)
G160713 NA other downstream 719441 5419119 ~ 5423513 (-)
CI01000030_03491770_03493119 CELF5A other downstream 2649854 3490119 ~ 3493741 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 549803 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 592006 6746960 ~ 6752411 (-)
G163065 NA other upstream 773231 6924483 ~ 6925657 (-)
G163139 NA other upstream 998222 7149474 ~ 7150144 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other upstream 1584184 7735436 ~ 7737720 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location