CI01000030_06405632_06428709


Basic Information

Item Value
gene id CI01000030_06405632_06428709
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6405568 ~ 6428709 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_06405632_06428709.mRNA
TGAACCGGTCTTTGACCCGTCTCCCATTGAACCGGTCTTTGACCCGTCTCCCATGTTTTCTATTTTAGCTCCAGCAAAGATAAGGCCTGGAACAAAACAGAAAATCCTGCTAGAGGGTCTGAATCTGTCCCGGGTAATAAAAGTCTCCATCGAGGTCTATGACTATCCAGTTTTCCAATCTGTCTTGTCGCGGGCCTCAGTTCTCCTAAAATCAAACAGCAACTACAGCGCCCTCACGACCATTGAGATTGATCCAAATATGCTACTTCCAGATGGAAAGAAGAAATATGTGAAGCTGGTTGCTCAGTTTAGCACCTTCCATCGTGCAGAACAAGTAATACCGGTGTCGTTCCGCTCTGGATACATCTTCATTCAGACTGATAAACCTGTTTACAACCCTGGGGACTCAGAATTCCGTGCTTCTGAGAGAATCATATCTTTTGAGATTCAGGTGAGTGTCGATGGCATTGACATAAGCATCATTACAAACATCATTGCAAAGCAACCGCTTATTTTCCGCAACAGTGTTTTATGGCTCAATTGGCTCATCTTTCAGAATCCAGATGGTATTGCAGTACATGGTATTTCCAGAGTCAAAGCAATCGATGGGATACTATCGGATACCTACCTCCTCTCCACTGTAGCCAAAGAGGGCAAGTGGAAAGTTGTTGCAAAGTTTGATCAGGGAAAAGAGAACATTTTCAGCAGAGAGTTTGAAGTAAAGAAATATGTGCTCCCAGCCTTCAATGTCACTTTGACTCCAAAGACGTCCCACCTCGGTCTAGATGCAGATAAGCTGGAAGTAGAAATAACAGCCAGGTATCTTTATGGTGAACCAGTGCAAGGTGTTGCATATGTTCTGTTTGGTATTGAAATAAACGGTGAGAAGAAGAGACTCACATCTATGAAACAACTGAATGATCTGAATGGAGGAATTGTTAGTTTGACCATGGAGGAGATAAAGATGGTCTATCCTGACACAAACAGCCTGCTGGGGTCTTCTGTGTACGTCAAAGCGTCAGTACTGACCAGCTCAGTGAGTAACCATGACGGCTCTCCAGCCCCTAATATTCCTGTTAAAATCAGCTTTCTTGAAAGTCCAATCAGTGTCCACAGCGGCACCATCAAAGTCTACATCAACATGCCTAACTTGGCCAGTTCATATGGTAATTCACAGATACTTAAAGTGGAGACAGCAAATCCTTTACTGAAACCAGAACAGCAGGCTGTTGAAGAGGTGCGTGTGGAACCGTATGCCTCTTTTATGGGCTTCAGGCATTACCTGCATATCTCAGTGGGTTCCAGTCGAGTGGTGGTGGGCGACAGTCTCAACGTCCAAGCGTACATCAAATCCTCAGCAAAATCAAAAAAGTTTGTGGAGCAGCTGACATATGCCGTCTTGAATAAGGGAAACATAATCCATGCTAGTAGAGTGAATGTCAAAGACCTAGATGTCATAAACATTCCTCTGCTGGTTACCACAGAAATGCTACCTGCGTTTCGGATTGTGGCGTATTACATTTTGCCATGGAAATATAGGGCGGAAGTGGTGGCAGACTCTGTGTTTGTTGATGTGGAGGACCGGTGTGTAGGTTCGCTCAGTGTAGGACCAGTGGAGGGTGAAAAATTCAATTCCTACTCACCAGGCAGCAGCTTTAAATTTCAAGTCAAAGGTGATCCGGGAGCAAAGGTCAGCCTGGTTGCTGTGGATAATGCCATCTTTCTGTTGAGTAAAAACCGCCTGACGCAGAAGAAGGTGTGGGAGGTGGTGGGACAGGGTGATATGGGCTGCACCTCAGGAGGAGGCAAGAATAATATGGGTGTTTTCAGTGATGCAGGACTGATGTTTTATTCCAGCACAGGAGGTTCCACTGACTACAAAAAAGAGAAGGTATATTCTGACCAGTTCCTGAAGAGATGTTGTGTGGATGGCATGAGGGAGATTCCCATGCCCTATTCATGCTACCGTCGCTCCCTCTACATCACCGAGGACTGGAGCTGCGTGTTAGCTTTCCTCCGCTGTTGTGCAGAGTACAGAGGGGAGGAGCTCGGTGACGTTACCAGGCCTCCGACGACCACCCTTCCACCAACCACCACCCCTCCACACACCACCACCCACCTTATTTTACCTACGCTTCATTATGGAGTTAACAGGTTTCGTTTTACTTTTTTCAGTTATTCAGAACGTATGGAGGGTCACGTCCTCGCATCTGCCCCTGTCAAATCTCTGCCGCCAGTACGCGAAGAGAGTCTTGGTGCAAAGATGGAAGAGGAGGAGGAGGAAGAGGATCAAGAGTTCGATGAAGATGATTTAGCTGTTATAGAAGACATTTACGTGCGCTCCAAGTTCTTCGAGTCGTGGCTGTGGACTGACATCAGACTGCCCAGTGTACCCAAGTCTGATGGGCTGGCTGTATTTCCAGTGGACACCGTTCTTCCTGACAGTATCACTCAGTGGGGGTTTCTAGCCGTCAGTTCCTCACCTGAGAGAGGTTTCTGTGTAGCTGAACCTTATAACGTGCGGGCGTGGAAGCCGTTCTTCATAGACCTGCGGTTGCCTCACTCAGTGTCCAGAAATGAACATGTGGAAATCAAAGCTGTGGTCCACAACTACAGGAACTCAAAACTGGAGGTAATGGTGATCCTGGATAAGACAGAGGACATGTGTAGTGTGGCATTTAGTGGACCCCACAGACAGCAGGTTTCAGTACAGGCCAGCTCCTCCAAGCTCATTACATACACCATCATCCCCCTTAAAACAGGAGAGCTCCCCCTACAGGTCACAGCCATCGCAGCCTCCTTCATGGGGCAAGATGCAGTGAGGAAGAATCTACGTGTGGTAGTAGAAGGCATCCAGACAATTAAAGTGAGGAGCTTTGTGTTGAGCCCCACTGAGAAAGGAGACAGTGGTGATTTGCTGGCAGACAGCATTGATAACTCCATTAAGGAGGACTCACTGGCGTCATTGATCCGCATGCCCGGCGGGTGTGTGGAGCAGAACCTGGCCAGGATCACACTGCCACTCATTGCAGCCCATTACTTGGACCACAGTGCAAACTGGGACATTGTGGGAATACATCGCAGAGAAGAGGCCATCAAATACATACAAAAAGGTGCGGTGTTCTCCATGGCACACTCATTTATCAGTGTCAGTGAGAAGCATCTGTGTGGCCCTCTGCTGTACCTACTCAAGAATAAACAGCATCCAGATGGATCCTTTCAGGAGAACAATCCTGTCTACGACACTAGTATGACGGGAGGCCTGCAAGGCTCTGAATCCAGAGTGTCTCTGACTGCATTTGTGCTCATTGCTTTGGCAGAGGCACAAAATGCTGTTACCTGCAAAGAGCCAGACCTCGACATACAGGACAAGACCAGAAAAGCAGCGATGTTTCTAAGAGAGCATTTCTCCCGGCTGACGAGGCCGTACACAGCAGCTATAGCATGCTACGCCTTAGCAGTTTCCAACCACGGCTGCATGAAGAGCATGTTGTTAAATTTAGCCTCACCTGACCGTACCCACTGGCCTGACTCTTCTAATCATTTCTTCACACTGGAAGCTACAGGCTACGCATTGTTAGCGCTTGCCAAAAGTGGCCACATGGAAGAAGCAGTCGCACCCTTTCGATGGCTGAGCGAGAAGCGTGGCATTGGGGGAGGGTACGGCTCTACTCAGTCTACTATGGTCGTGCTACAGGCCCTGTCTGAGTACCTAGTGAAGAGCCCTCCTCCTTCTGACCTCAATTTGTTGGTGCAGCTCAGTGTTCCCGGTCGAAGTGACGTACGCTGGACCTTCGATCCCAAAGTTGCTTATGTGGCCCGATCCTCACGGGTAGTGACTGTGTACCACCAGCTTCCTGCTGTGTACGAGAACAGCACGTGTAACGGCTTTCAGCTGGACATCTCCATCGCTGAGACTAATGAAAAACCCCCACCGGATGTAGAAAAGTCCTACAGACTCAATATCCACGTGAGGGCTCTGGAGGGACGCCAAGTGAGGATGGTGATTCTGGACATCGGCCTGCCTACTGGCTTTGAGCCTGAAAACTCAGATTTAGAGTCGCTTAAAAATTCAGTGGACCGCTATATTAACAACTTTCAAGTGGTGGACAACCTGAGTGACAGAGGATCCCTCATAATTCACTTGTTTAAGGTGTCCAGTACTGAGACAGACATGATCTCATTCAGACTGCATCAGAAATTTAAAGTGGGGCTCCTTCAGCCTTCCACTGTCACAGTTTACCAGTACTACAACAAAGATAAGCGCTGTAGCAGATTCTACTCTCCTCCTGAAGACCAACAGCAGCTCGATCAGATCTGCAAAGACGACGTGTGCCGCTGCTCACAGGCCTACAGGGTCAAACTGATCAGCGCCAGCCAGAGTCACTATGATCAGTATGATATGGAGATTGTGCAGGTTATCAAAGAGGGGACAGAAGAAGGTCTGAACGAGAAGGAAAGAAGAATGTTCCTTTCTCATGCAAGTTGTAGGACAGGGCTTGGTTTGAGAGAAGGTCAGGACTATCTGATCATTGGGCCGATCGCTGATGTTTGGCAAGCAGGGAGCACGTCCAACAGGTATGTGTATACGCTGGGTAAAGACACGTGGGTCGAGCGCTGGCCGGCCGAGTCTGAATGCGGTGCTGGATCTGCTCTGCAGGTGAAATGCAACGAGCTGAAGAGCTTCGCAACGGCACTGACAGAAAGCGGCTGTCAGTCTTGAGCCAAATGCTATTCTTTGAACTGATGAATTGTCATGGTTATTGGTTTCAGTCCACTGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_06405632_06428709.mRNA True 4787 mRNA 0.48 34 6405568 6428709

Neighbor

gene id symbol gene type direction distance location
CI01000030_06383887_06390119 PDGFA, PDGFAA coding downstream 15449 6383578 ~ 6390119 (-)
CI01000030_06184908_06193012 KAT14, CSRP2BP coding downstream 212556 6184613 ~ 6193012 (-)
CI01000030_06168725_06172057 POLR3F coding downstream 233511 6168454 ~ 6172057 (-)
CI01000030_06162749_06165879 NPTXRB coding downstream 239053 6161812 ~ 6166515 (-)
CI01000030_06143122_06149273 FAM20CL coding downstream 254316 6142954 ~ 6151252 (-)
CI01000030_06430857_06435176 CCDC130 coding upstream 2053 6430762 ~ 6435176 (-)
CI01000030_06442356_06446395 MORG1, WDR83 coding upstream 13647 6442356 ~ 6446395 (-)
CI01000030_06447375_06451108 SDE2 coding upstream 18345 6447054 ~ 6451207 (-)
CI01000030_06453382_06458615 NA coding upstream 24522 6453231 ~ 6458615 (-)
CI01000030_06532783_06533802 NA coding upstream 104035 6532744 ~ 6535106 (-)
G161399 NA non-coding downstream 150829 6248834 ~ 6254739 (-)
G161395 NA non-coding downstream 159550 6245801 ~ 6246018 (-)
G161394 NA non-coding downstream 160868 6244454 ~ 6244700 (-)
G161393 NA non-coding downstream 166963 6238317 ~ 6238605 (-)
G161385 NA non-coding downstream 184632 6219908 ~ 6220936 (-)
G161522 NA non-coding upstream 123062 6551771 ~ 6554499 (-)
G161519 NA non-coding upstream 165660 6594369 ~ 6599857 (-)
CI01000030_06841490_06848643 NA non-coding upstream 412716 6841072 ~ 6848659 (-)
G163043 NA non-coding upstream 438376 6867085 ~ 6867895 (-)
G163053 NA non-coding upstream 471235 6899944 ~ 6900921 (-)
CI01000030_06131710_06138371 NA other downstream 267162 6131090 ~ 6138406 (-)
G160949 NA other downstream 605142 5797297 ~ 5800426 (-)
G160712 NA other downstream 893494 5456960 ~ 5512074 (-)
G160713 NA other downstream 982055 5419119 ~ 5423513 (-)
G160213 NA other downstream 2936406 3466353 ~ 3469162 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 272346 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 314549 6746960 ~ 6752411 (-)
G163065 NA other upstream 495774 6924483 ~ 6925657 (-)
G163139 NA other upstream 720765 7149474 ~ 7150144 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other upstream 1306727 7735436 ~ 7737720 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021204 c3b.1 coding NC_007133.7 CM002906.2 26180184 ~ 26236275 (-)