Gene
RNA
| Item | Value |
|---|---|
| gene id | G161522 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 6551771 ~ 6554499 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU183412 | True | 958 | lncRNA | 0.32 | 2 | 6551771 | 6554499 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_06532783_06533802 | NA | coding | downstream | 16665 | 6532744 ~ 6535106 (-) |
| CI01000030_06453382_06458615 | NA | coding | downstream | 93156 | 6453231 ~ 6458615 (-) |
| CI01000030_06447375_06451108 | SDE2 | coding | downstream | 100564 | 6447054 ~ 6451207 (-) |
| CI01000030_06442356_06446395 | MORG1, WDR83 | coding | downstream | 105376 | 6442356 ~ 6446395 (-) |
| CI01000030_06430857_06435176 | CCDC130 | coding | downstream | 116595 | 6430762 ~ 6435176 (-) |
| CI01000030_06558263_06559216 | NA | coding | upstream | 3576 | 6558075 ~ 6559484 (-) |
| CI01000030_06560646_06561937 | NA | coding | upstream | 5345 | 6559844 ~ 6561937 (-) |
| CI01000030_06570135_06578090 | GLIS2A | coding | upstream | 15523 | 6570022 ~ 6578090 (-) |
| CI01000030_06602837_06605662 | NA | coding | upstream | 47575 | 6602074 ~ 6605692 (-) |
| CI01000030_06645888_06646573 | NA | coding | upstream | 91303 | 6645802 ~ 6647456 (-) |
| G161399 | NA | non-coding | downstream | 297032 | 6248834 ~ 6254739 (-) |
| G161395 | NA | non-coding | downstream | 305753 | 6245801 ~ 6246018 (-) |
| G161394 | NA | non-coding | downstream | 307071 | 6244454 ~ 6244700 (-) |
| G161393 | NA | non-coding | downstream | 313166 | 6238317 ~ 6238605 (-) |
| G161385 | NA | non-coding | downstream | 330835 | 6219908 ~ 6220936 (-) |
| G161519 | NA | non-coding | upstream | 39870 | 6594369 ~ 6599857 (-) |
| CI01000030_06841490_06848643 | NA | non-coding | upstream | 286926 | 6841072 ~ 6848659 (-) |
| G163043 | NA | non-coding | upstream | 312586 | 6867085 ~ 6867895 (-) |
| G163053 | NA | non-coding | upstream | 345445 | 6899944 ~ 6900921 (-) |
| G163070 | NA | non-coding | upstream | 389646 | 6944145 ~ 6944501 (-) |
| CI01000030_06131710_06138371 | NA | other | downstream | 413365 | 6131090 ~ 6138406 (-) |
| G160949 | NA | other | downstream | 751345 | 5797297 ~ 5800426 (-) |
| G160712 | NA | other | downstream | 1039697 | 5456960 ~ 5512074 (-) |
| G160713 | NA | other | downstream | 1128258 | 5419119 ~ 5423513 (-) |
| G160213 | NA | other | downstream | 3082609 | 3466353 ~ 3469162 (-) |
| CI01000030_06701334_06704398 | MGC53794, FAM195A, FAM195A.S, MCRIP2 | other | upstream | 146556 | 6701055 ~ 6704745 (-) |
| CI01000030_06747047_06752255 | NA | other | upstream | 188759 | 6746960 ~ 6752411 (-) |
| G163065 | NA | other | upstream | 369984 | 6924483 ~ 6925657 (-) |
| G163139 | NA | other | upstream | 594975 | 7149474 ~ 7150144 (-) |
| CI01000030_07736031_07737720 | LSM7.L, GM13182, LSM7 | other | upstream | 1180937 | 7735436 ~ 7737720 (-) |
