G161519


Basic Information

Item Value
gene id G161519
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6594369 ~ 6599857 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU183407
CTGCAGCTGCTGAGGGAAAACCGCACGGTATTCAGTGGCCACTAGTGAATCTTTGGCGCGAAAACTAAAAGCGCAACCAGTGAAGTTGGTGTATTCAAAATGGTCAATGTTTATGATAATGTCTTTATTTATATTATTTATTTTATTAATTATTCTTTATACGTTATTATTCTTTTACATGTTATTGATTTCTTGAATCATTTAGGCCTATATATTTCCTATATGCTCTGATATGTTTGAATATTTCCAAATGTAAGATCTTTGGTGTCTCTTCTGTGCTGCAAGATTGATCAGGTGTATTTTCCATCAGAATTGATTAAGTGATGTACCTTTGTATCAAAATATGTCCGTTTCCATCTCTGCCGACGTGAGATAATGCAAGATCTGCAGCATTCTCTTAAAGGTCTTAAAGGTGTTAAAACAACACCTTCTATATCTATTTTTATCTATCTTTGACATTTGACCAGTCACTCTGACCTAACCGTTACACCAACTATGACATAATGGATGAGTCTGTTTGACCTTTTCTTATTAGACCAAAACATGGTGTAAGTTTCCTGCATATATATTCATTGCTCTTATTTTTGCTCTTCACTTCTACTTCTGGCTGCTTCTACTTCTTCTACTTCTCCTTTCATTCTTCAAGTATCTTACTTCTTTTGTTCTTCCTTTCTCTATACTCTGATCTTAACTTTCATCTGTTAGATACAATACTCTGGATTTTATTATAAATTATTATTTACTTGATTAATTTGTTTGTCTCTATAAGACAACATTTTTACTTAATACATTTATTATTCCTTATTCAAATGTAATCTCTGACATAATCATTCCTGGATTGCCTGGATCTCATTCCATCACAAAACAATTGCTTTAATGAGTCGATCCTTTTTAGTGAGTCAAACATGCACAACTAACTACTCACTGACTGGTTGTTCATATAACAATGTGCAGTTAAAGAAATACACTACTGTTTAAGTTTGGGGTCTGTGACATGTTTTTGTTCACCAAGGCTGAACAAAAAATATATAGTAAAAACAGTAATACTGTGAAACATTATAACATTATAAATGTCTTAAAACCATAAAGGAACAGAAATGTTTAAATTATTCATGATTACTATCCCGATTTCTAATAAGCCAGACTGTAACAATATTGAATTCCAGTTCAGAGGTGTATTTTGCCTGATTATCATCTCTATTTATATTTCTCGTGTCTTTGTCAATGCTGTCTTTTCACCTCTCTCTTGTTGTTTGCGATTCTCAATGATTCCAGGTGTGTCCACAAATGTGACACGCTCCAGGAGTTTGTGCGGCATCTCGATTCCCACCAGCTTTTCCAGGAACCCCTGACCAAACTTCTCCAGTGGCGAGAAAGAGCGGGAACTGTCCGCAGCCATAACAATGCCCTCAATGGTGCGAAACTTCTCACCATGCATTAGGACAGTGTATTCTGAGGTTGTGGGCTCAGCCCCTGAGAAAACAAAAGAGAGCAAGATGGAGTTTGTAAAGCTGTTGTGAAGTGTCATCGAGACCCAGAAGATAATTGATCATGGAAGACTTGCCAACACTCCAAGGACCAAGGAACAGGACCATGGGCTTAGAGTTGATCTCTGCATCTGAACAGTGTGAGGAAAGCAGACCATTTAACTGAGGATATGGCTTCATTTTGACACTTTTTTGTGGAAGTAAAGGAATGATGTTGTAAAACATCCATTTACCTGACACTTCATGCTGCCTGAGCTCATTGTATCTGTAGGCCTTCTCCAAGGGATTAATTGCAGAGTTGTAGACATGCTGCAGCTTCTTCAGAGCATCTATGGGAGGTAGAGTTGATTGAATGATGACAGGATGGTATATAGAAAGAAATAATAATAATAGCAGAATGAACCAATATTATATAATTTTATCATTTTGGGGATGCATTATAGACACTGCTACATAAATTATATAAACAGTCCAATGAAAATTCAAGTTAAATTCTTGAAACAGTAATAAGAAAGATATTGCTGAGCAAACAATTAATTGCTTATGATTTTGCACACTATAGGTGTTCCCAAAAAATTAGCACATACTAAATTGTTTTGGTCAAGCTAAAAAGTAATTAATGTAGAAATAACTGACTTGATATGGTACATACTGTGCAGCCCAGGAAGTAATACTTTTTTACATAATATTTTCATGATATGACTCACCAACAAATTCCCGTGAAGGTTCAGCTGTTGCCAGACGCAGCGTCTCTTCAATGTGAGACCGATCTCTTGCGGCAGGACCTGAGGGGGTTTTTTTCTCCACTGCCAGAGGAAATATATAGCCATCATAAAATCTGAATCTCATATCATCATAACATTTTATTTCATGTGGATGGCTCCCACAAAACACGGTTATTATTGGTTTGCATTTTCAATTTTTTCTAAATGCTATTTTCAAAATACATTCACTTTTTTTATTTTAGGGACAATTTTGTTGTTATGTATTTTCATTTCAGTGGCATTTTTTCTAGTTAAGGAATCTGTTGTGGAATCAACAGATTATTGCCACAGTTTAAATTTATATCTGAAGTAAACAAGATCTCTGAGGAAAGAAGCTGCATCTGTATTTACACTAGAATCACAATCACAGGAAACAATGTATCAGCTCAATGAGTTGCTTGTTGATTTACGTGCACAGCTAAAAGATAAAAATTGACCAGTTTAGACCATTGTTAGTGATATACTAGTGATAGTGATTTATTTATTTTCATATTAGTTGACAATAAAACCTAGCTCCAAAACAGAATACAACTGTCATTTTGGGTCCATCTACTGCAGCATCTACATCAGCTATCTATTTGGAGCCAGTTAAACACAATCACTGTACTATTAAAAGCATCTGAAACATTTCTTCCCCATTACAAAACTGTCCCCCATGCAGGCCAGAGAACATATTGTTATGATTGGCAATGGACTTGTGCCAAGGGTTATTTCTGTTAGGTTATTTTGGTGGTGAGTTTATTCTTGTGCCACCTTTGACCAAAGTATCAAGTGGAGAAGCACAAGGAACTGACTTTTACAATAGTGCCCCCTAACGACAGGACAACAACATAGGTTATTTCCACTATAATGGGGTTTAACCGGATGCTTTGTGATGATTCTGAAGCTCTTTATTATTAGATTTTAAATTAGAGTAAAGGTAACTGTAGTAACAATTCTGTGAAATTTCACAAAAATCGTCCACTGTATATTGTCAAAGTATTTTCTAAAAATATGTTAATTTGCTTCGCCAAACAGCGGCAGAGGTGCAGTCACATTTACTGTTGTTCAGAGAATTTTCATAGGCGAAATCCAGTAATTTCTACAAGAATTCATGCAATTGAGAAATTAGCGTGAGGGCAAAAGATTTCCACACAAACGGGTTCAAGTTGGTCACGCAGATTTGCTTCATTGACCAACACAAAGCTGCTTTAGTTTGTCTAAATTTTAGAACATTTTAGAAAACTGATTCCAATACAACAATTAGACATTCTCTTATTTCATATTGACATTAAATGTTCAATATTATTCATGCTGAGTGAACTACACTGTACCTTTGACAGATGCTTTGGGTGCTGGTATATCATCTGACACTTCTTCCACCTTTACTTCTTCAGCAGGTGCAGGAACTTCTTCTTGGATCATAATTTGTTCTGGAGTTGGTTCTACAAGCTCCTCGGTTACCTCTTGGGCCAATTCAACAACCTCCTCAACAACTTCTGCTGCGAGTTCCTCAGCCTCTTCTGTTTCCACCATTTTTACAAAGGCTTCTGGTTCTTCTGATTCAACCTCATGAGCGCCTTCTTCCTCTGTTACAGCTTCCTCTTCTTCCTCCTCTTCCACTTCCACTTGTTCCAATAGCTCTTCAGGCTGAGGAACCACCTCTGCCTCTTTTTCAACCACCTGTTTCTCACCTCCCTCATCCTGAATATGAAGACCCTCCTCTTCCTCAACTACCTCTTCTTCAGTCTGAGAAAGTTCCTCCTCTTCACCTGCTTTATCTTTAGTCTGAAGACCCTCCTCTTCCTCAACCACCTCCTCCTCAATCTCCTCTTCGACAGATTCCTCAACAGCCATTTGTGCCTCTACATCACTGTCATCCTCTGAGATCTCATGTGCCTCCTCAAGAACTTCCTCCTCCTCCACTTCATTGGATGCCTCTAACTCAACTTCTGCCTCCACTTCATGTGCTTCCTCCTCAAATATCTCTTCAGAAGAGGCCTCCTCTTGACTCAACTCTTCAGATTTCTCTTCTGAAACAACCTCATCCTCTTCATTCTCATTAGAGCTGACATCTTCTGCCGCAGTGTCAATATGTGCACCAGTGCCACAGGGTTGGCAGACAGGTCTGTTTGGTGCAGGTGTGTCATTAGAGGAGCTTTGGCTGATATCTTCTGTGCCATCACAGCAGTTGAACAGCGCACCTTCAGACTTCAGCTGGAGCGGCACAAGCGGGTCAGTCTCAGACCCCACTGCATCTGCTAAGAAAAAACAACATTATGAAGAATAAATCATATTTGCATACATGCCTTCCTGTTGCTTAAACAGTAGCATGGGTTCAATTCCCAGGGAAAAGCAAGAAATGATAACAACGAGTATCTTGAATAAAATGCAAGTTGCATTGGATAAAAAATATCTTCAAATGCATATATCTAAATTATTACAACATAATGGCAACAAAAATGACTATCTACAAGCTACTGATGCACCAAAATGGATTTTTTACTAAAACACTAAAACCTAAATTAAAATTTTCATTTAGCTGAAAATTGGGTAATTGATTTCGTATTCTGTTCAAGGTGTTATGTTTACAGGTCATAAACTAATTGTAGTAAAGTTCTTTAGCAACAAGTCGCCTCACGATTGCTGCTCAAGCATCATTTGTGGTCATAGTGAAGTGCATACCGTTTTTTTGTGTTCGCCAGAATAGTTTTGGTTGCCGAAATGTTGTTGCATCACCAGTACTGCCCGCCACATACATAACATCACTTCCCCTGAAGAGAAATATCTCTCACCGTACTGTAGGTACATTAGCATTAGCATTTAGCATTCTGTGTTTGAGGCAGCATCATCTACATCACAGTAACTCAAGTGAACAAAACACAACCATGGTTACTATCCTAAAGCATGTAAAAAAACGATATCTTAAAATGTCATAGTTGTAATACCATGGTTTATGGATTTAAACAGCATGACTTGGTGGCAGAGCTGCTTTGGTGTGAATATGTGTGTCTGTGGTGATGACCCATGTCTGTGATTCATGCGGCGATGAATGCTCTTGATGAGAGCTAAATGCTTTTCATGTGAATCACATCCTGAAATAGGGAGCCGATCTGGCAGGAGAAGAGAACGCCAAGTCTTTTCTGTTCATGTGGATCATCAGAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU183407 True 5397 lncRNA 0.38 2 6594369 6599857

Neighbor

gene id symbol gene type direction distance location
CI01000030_06570135_06578090 GLIS2A coding downstream 16279 6570022 ~ 6578090 (-)
CI01000030_06560646_06561937 NA coding downstream 32432 6559844 ~ 6561937 (-)
CI01000030_06558263_06559216 NA coding downstream 34885 6558075 ~ 6559484 (-)
CI01000030_06532783_06533802 NA coding downstream 59263 6532744 ~ 6535106 (-)
CI01000030_06453382_06458615 NA coding downstream 135754 6453231 ~ 6458615 (-)
CI01000030_06602837_06605662 NA coding upstream 2217 6602074 ~ 6605692 (-)
CI01000030_06645888_06646573 NA coding upstream 45945 6645802 ~ 6647456 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 coding upstream 101230 6701055 ~ 6704745 (-)
CI01000030_06705681_06711246 GDE1 coding upstream 105567 6705424 ~ 6711246 (-)
CI01000030_06715403_06717267 HMOX2A coding upstream 114796 6714653 ~ 6717726 (-)
G161522 NA non-coding downstream 39870 6551771 ~ 6554499 (-)
G161399 NA non-coding downstream 339630 6248834 ~ 6254739 (-)
G161395 NA non-coding downstream 348351 6245801 ~ 6246018 (-)
G161394 NA non-coding downstream 349669 6244454 ~ 6244700 (-)
G161393 NA non-coding downstream 355764 6238317 ~ 6238605 (-)
CI01000030_06841490_06848643 NA non-coding upstream 241568 6841072 ~ 6848659 (-)
G163043 NA non-coding upstream 267228 6867085 ~ 6867895 (-)
G163053 NA non-coding upstream 300087 6899944 ~ 6900921 (-)
G163070 NA non-coding upstream 344288 6944145 ~ 6944501 (-)
G163033 NA non-coding upstream 362206 6962063 ~ 6962326 (-)
CI01000030_06131710_06138371 NA other downstream 455963 6131090 ~ 6138406 (-)
G160949 NA other downstream 793943 5797297 ~ 5800426 (-)
G160712 NA other downstream 1082295 5456960 ~ 5512074 (-)
G160713 NA other downstream 1170856 5419119 ~ 5423513 (-)
G160213 NA other downstream 3125207 3466353 ~ 3469162 (-)
CI01000030_06747047_06752255 NA other upstream 143401 6746960 ~ 6752411 (-)
G163065 NA other upstream 324626 6924483 ~ 6925657 (-)
G163139 NA other upstream 549617 7149474 ~ 7150144 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other upstream 1135579 7735436 ~ 7737720 (-)

Expression


Co-expression Network