G161352


Basic Information

Item Value
gene id G161352
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6114451 ~ 6118974 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU183209
GACAGGAAGTGATATTAAGCTGTTCAACTAAATGCACTCTGAGCGACAAACACACTTACATCTGGTACAAGAACGGACGGCAGGTAACGGATGGATTCACTAAAGCCAACAAGCTGTACCTGGACTCAGTCAGCAATGAAGAGCTTCAAGAGTATTCCTGTGCTGTAAGAGAAAATCAAGAGGAGAGCACAGCTTTACAGAACACCGTAATCATACTGTCCGTGTTTCTGGTTCTTGCACTTATAGGAGTCCTGTGGTATAGGAGGAGAAGGAGTAATTCATCTCAACAGCATGAGGAGAGAAAGGATGACGTACAGTCAGGTTCTGCTACACTGTATGATAATGCTGAAGCCTTGTCTACAGTCTGCACACAGGACGTAAAGGATCAGGACGTTCATTATTCAGCTATTAATTTCAAGCAGTCTCACATAAAGGACACATCTTTGGCACCTACTGCTGTACACTCAACCTCAGATGATGTTCATTATGCCTCTGTGAAGTTCAGCTTACCCTCCGTTTAGACCCATCATAAAAAAAACTACTGAACAACTCAACTGCTGTCATCTGCTGCCATATTGTAACAAGCTTTTGCTCTTGTCAAATGTCTACTGATGTCATTTGTGTAGTGTAAAACATAATTTTACTGAAATTAAACAAAAATATGGAAAATGTTGTAAAGTGACTGAATAGGTGTACATATGTGTGTTTCTCCTGAATTTTTAAACATTCTAATTGTGTGTATGTATATAAAAAAATTTTTGTTTAAATTTTTAATTCAAAAATTACATTTGCTTAAATTGTTTATGTAGGTGTCTTCAGATGAAATAAATAAATTCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU183209 True 838 lncRNA 0.37 4 6114451 6118974

Neighbor

gene id symbol gene type direction distance location
CI01000030_06107092_06109831 NA coding downstream 3475 6106653 ~ 6110976 (-)
CI01000030_06092897_06102203 NA coding downstream 11820 6092840 ~ 6102631 (-)
CI01000030_06079733_06090776 NA coding downstream 23675 6079691 ~ 6090776 (-)
CI01000030_06070218_06078371 VTG1 coding downstream 36073 6070142 ~ 6078378 (-)
CI01000030_06042392_06063112 VTG1, VTG7, VTG6, VTG4 coding downstream 51325 6042254 ~ 6063126 (-)
CI01000030_06131710_06138371 NA coding upstream 12116 6131090 ~ 6138406 (-)
CI01000030_06143122_06149273 FAM20CL coding upstream 23980 6142954 ~ 6151252 (-)
CI01000030_06162749_06165879 NPTXRB coding upstream 42838 6161812 ~ 6166515 (-)
CI01000030_06168725_06172057 POLR3F coding upstream 49480 6168454 ~ 6172057 (-)
CI01000030_06184908_06193012 KAT14, CSRP2BP coding upstream 65639 6184613 ~ 6193012 (-)
G161099 NA non-coding downstream 88435 6025636 ~ 6026016 (-)
G161097 NA non-coding downstream 92587 6021558 ~ 6021864 (-)
G161096 NA non-coding downstream 93693 6020279 ~ 6020758 (-)
G161095 NA non-coding downstream 94619 6019318 ~ 6019832 (-)
G161359 NA non-coding upstream 56612 6175586 ~ 6175946 (-)
G161375 NA non-coding upstream 61982 6180956 ~ 6181404 (-)
G161376 NA non-coding upstream 63293 6182267 ~ 6182496 (-)
G161377 NA non-coding upstream 74467 6193441 ~ 6193717 (-)
G161380 NA non-coding upstream 94257 6213231 ~ 6213574 (-)
G160949 NA other downstream 314025 5797297 ~ 5800426 (-)
G160712 NA other downstream 602377 5456960 ~ 5512074 (-)
G160713 NA other downstream 690938 5419119 ~ 5423513 (-)
CI01000030_03491770_03493119 CELF5A other downstream 2621351 3490119 ~ 3493741 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 582081 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 624284 6746960 ~ 6752411 (-)
G163065 NA other upstream 805509 6924483 ~ 6925657 (-)
G163139 NA other upstream 1030500 7149474 ~ 7150144 (-)

Expression


Co-expression Network