Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU183209 |
| length | 838 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 4 |
| gene id | G161352 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 6114451 ~ 6118974 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU183216 | lncRNA | downstream | 17424 | 6096954 ~ 6097027 (-) | True | G161356 |
| TU182891 | lncRNA | downstream | 88435 | 6025636 ~ 6026016 (-) | True | G161099 |
| TU182889 | lncRNA | downstream | 92587 | 6021558 ~ 6021864 (-) | True | G161097 |
| TU182888 | lncRNA | downstream | 93693 | 6020279 ~ 6020758 (-) | True | G161096 |
| TU182887 | lncRNA | downstream | 94619 | 6019318 ~ 6019832 (-) | True | G161095 |
| TU183219 | lncRNA | upstream | 56612 | 6175586 ~ 6175946 (-) | True | G161359 |
| TU183237 | lncRNA | upstream | 61982 | 6180956 ~ 6181404 (-) | True | G161375 |
| TU183238 | lncRNA | upstream | 63293 | 6182267 ~ 6182496 (-) | True | G161376 |
| TU183239 | lncRNA | upstream | 74467 | 6193441 ~ 6193717 (-) | True | G161377 |
| TU183242 | lncRNA | upstream | 94257 | 6213231 ~ 6213574 (-) | True | G161380 |
| CI01000030_06107092_06109831.mRNA | mRNA | downstream | 3475 | 6106653 ~ 6110976 (-) | False | CI01000030_06107092_06109831 |
| CI01000030_06092897_06102203.mRNA | mRNA | downstream | 11820 | 6092840 ~ 6102631 (-) | False | CI01000030_06092897_06102203 |
| CI01000030_06079733_06090776.mRNA | mRNA | downstream | 23675 | 6079691 ~ 6090776 (-) | True | CI01000030_06079733_06090776 |
| CI01000030_06070218_06078371.mRNA | mRNA | downstream | 36073 | 6070142 ~ 6078378 (-) | True | CI01000030_06070218_06078371 |
| CI01000030_06042392_06063112.mRNA | mRNA | downstream | 51325 | 6042254 ~ 6063126 (-) | True | CI01000030_06042392_06063112 |
| CI01000030_06131710_06138371.mRNA | mRNA | upstream | 12116 | 6131090 ~ 6138371 (-) | False | CI01000030_06131710_06138371 |
| CI01000030_06143122_06149273.mRNA | mRNA | upstream | 23980 | 6142954 ~ 6151252 (-) | True | CI01000030_06143122_06149273 |
| CI01000030_06162749_06165879.mRNA | mRNA | upstream | 42838 | 6161812 ~ 6166515 (-) | True | CI01000030_06162749_06165879 |
| CI01000030_06168725_06172057.mRNA | mRNA | upstream | 49480 | 6168454 ~ 6172057 (-) | True | CI01000030_06168725_06172057 |
| CI01000030_06184908_06193012.mRNA | mRNA | upstream | 65639 | 6184613 ~ 6193012 (-) | True | CI01000030_06184908_06193012 |
| TU182698 | other | downstream | 314025 | 5797297 ~ 5800426 (-) | True | G160949 |
| TU182441 | other | downstream | 602377 | 5456960 ~ 5512074 (-) | True | G160712 |
| TU182444 | other | downstream | 690938 | 5419119 ~ 5423513 (-) | True | G160713 |
| TU181889 | other | downstream | 2645289 | 3466353 ~ 3469162 (-) | False | G160213 |
| TU183215 | other | upstream | 14401 | 6133375 ~ 6133500 (-) | True | G161355 |
| TU183395 | other | upstream | 582081 | 6701731 ~ 6704145 (-) | True | G161511 |
| TU183401 | other | upstream | 624284 | 6743258 ~ 6745350 (-) | False | G161515 |
| TU183402 | other | upstream | 624324 | 6743298 ~ 6745350 (-) | False | G161515 |
| TU183403 | other | upstream | 624324 | 6743298 ~ 6745350 (-) | True | G161515 |
