RNA id: CI01000030_06131710_06138371.mRNA


Basic Information

Item Value
RNA id CI01000030_06131710_06138371.mRNA
length 1982
RNA type mRNA
GC content 0.41
exon number 6
gene id CI01000030_06131710_06138371
representative False

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6131090 ~ 6138406 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGACATCAGACTCATATCACTGATCCTACTTATACACATTTCAGGCTGTCTATCATTGGACCTTCTCTCTGTGACCTGTGAAGATGTTTGTGCTCTGAGGGAAAACACTGTGCAGCTGAGATGTTCTTATTCTGAAATCAACGTCAAAACTGTGTTCTGGTTCAGCCGGAAACAGAGTAAAAACTGGAGAAAGACTGATGAACCTGAAGATTTGACTGTAGACTTGGACTACTCAGGACGAGTGAAGAAGGAGGCCGTAAACGACCATTCAACACTCACAATTTCAGACCTGAGAGAGAGAGACTCTGGAGAATATCAGCTCATGTTCATCATGAAGGATGGAGTTAAACGTCTCGGCTCAGTCGCTGTCAATCTAACAGTCACAGGCTGTCTATCATTGGACCTTCTCTCTGTGACCTGTGAAGATGTTTGTGCTCTGAGGGAAAACACTGTGCAGCTGAGATGTTCTTATTCTGAAATCAACGTCAAAACTGTGTTCTGGTTCAGCCGGAAACAGAGTAAAAACTGGAGAAAGAATGATGAACCTGAAGATTTGACTTTAGACTTGGACTACTCAGGACGAGTGAAGAAGGAGGCCGTAAACAACCATTCAACACTCACAATTTCAGACCTGAGAGAGAGAGACTCTGGAGAATATCAGCTCATGTTCATCATGAAGGATGGAGTTAAACGTCTCGGCTCAGTCGCTGTCAATCTAACAGTCACAGGTATTTCTAAGGATCACTGCTGGGATGTGACTTACACCTCTAGAAGAGTCTGTGCTTTGATGGGCTCAACAGTAGACATTTCCTGCACATACTCACCTCCCTCTGGTTATACTGTAAATAAAACATTCTGGCATTACGATCAGTCTGGTGACTTCAAGGATCTGCGTGAGGAGCGTCAGTTTGCTGGTCGTGTAGAGTATGTGGGGAACACACTGAGAATCAAAGAGCTCAAGATGAACGATTCTGGAGAATATCGATTCAGGATCATCACTGACACAACAGGAGGAACATACTCTGGAACACCTGGAGTCATCCTTACTGTTACAGATACGATGGTGATAAGCTGCACAGACATTATATCAGAGCGACAGGAAGTGATATTAAGCTGTTCAACTAAATGCACTCTGAACAACAAACACACTTACATCTGGTACAAGAACGGACGGCAGGTAACGGATGGATTCACTAAAGACAACAAGCTGTACCTGGACTCAGTCAGCAATGAAGAGCTTCAAGAGTATTCCTGTGCTGTAGGAGATCCAGTGGACAGCACAGTGTTCAGCCATTATACAGTCATTCTGCTGGTGTTTTTACCTCAGTTTCTCATAATAGCAGCTCTGTGGATGTGGTGAGTAAAGCATCCAGTGAAATTCACATCTCCATGACGTTTAGTTAATGAAATGAATTCAGATTATAAGAATGTGAATTATGATTCAACAGGTTTTTCATCAGAATGCATCTAATATCTAAACCAAACTGAAAACAAAATTGTAGGTGAGAAATTATGTATATAGATAATCTACTGTAAGAGATGCAATGACAAAAACATTGTTGAATATGTATTTAATATCTTTCTGTTTGTCTATCTCAGACTCTGATGTTCCACATCTGTTCATCTGCTGTCTGTCCATCAGAGCTGGTGGAGTGATGTCATTGTGAGATCATCACCTAGCAACAGTCAGAACTGTCAGCAGCAACATGTGATACAGTGGTGTCATATACAGTGACATATCAATGACTGCTCAGTCTGCATAATCAAACACAACGATAGTACAAGTTTTTTCTGCTTATGCTTAGTATAAGAAGAAACTTTTTATTCTTTAAAACTCCTTCAAAGATCCACTTTAATGAAGTGGTGCCAACTTTGTGTTCTGTTTAACGTTAACTTTTTTCAGTTTTAGTGCACTTTCATATTTTATATTTCAATGGATGAACTGTAACCACAGTAATGATGCAGATCAAAATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183209 lncRNA downstream 12116 6114451 ~ 6118974 (-) True G161352
TU183218 lncRNA downstream 15354 6115495 ~ 6115736 (-) True G161358
TU183216 lncRNA downstream 34063 6096954 ~ 6097027 (-) True G161356
TU182891 lncRNA downstream 105074 6025636 ~ 6026016 (-) True G161099
TU182889 lncRNA downstream 109226 6021558 ~ 6021864 (-) True G161097
TU183219 lncRNA upstream 37215 6175586 ~ 6175946 (-) True G161359
TU183237 lncRNA upstream 42585 6180956 ~ 6181404 (-) True G161375
TU183238 lncRNA upstream 43896 6182267 ~ 6182496 (-) True G161376
TU183239 lncRNA upstream 55070 6193441 ~ 6193717 (-) True G161377
TU183242 lncRNA upstream 74860 6213231 ~ 6213574 (-) True G161380
CI01000030_06107092_06109831.mRNA mRNA downstream 20114 6106653 ~ 6110976 (-) False CI01000030_06107092_06109831
CI01000030_06092897_06102203.mRNA mRNA downstream 28459 6092840 ~ 6102631 (-) False CI01000030_06092897_06102203
CI01000030_06079733_06090776.mRNA mRNA downstream 40314 6079691 ~ 6090776 (-) True CI01000030_06079733_06090776
CI01000030_06070218_06078371.mRNA mRNA downstream 52712 6070142 ~ 6078378 (-) True CI01000030_06070218_06078371
CI01000030_06042392_06063112.mRNA mRNA downstream 67964 6042254 ~ 6063126 (-) True CI01000030_06042392_06063112
CI01000030_06143122_06149273.mRNA mRNA upstream 4583 6142954 ~ 6151252 (-) True CI01000030_06143122_06149273
CI01000030_06162749_06165879.mRNA mRNA upstream 23441 6161812 ~ 6166515 (-) True CI01000030_06162749_06165879
CI01000030_06168725_06172057.mRNA mRNA upstream 30083 6168454 ~ 6172057 (-) True CI01000030_06168725_06172057
CI01000030_06184908_06193012.mRNA mRNA upstream 46242 6184613 ~ 6193012 (-) True CI01000030_06184908_06193012
CI01000030_06383887_06390119.mRNA mRNA upstream 245207 6383578 ~ 6390119 (-) True CI01000030_06383887_06390119
TU182698 other downstream 330664 5797297 ~ 5800426 (-) True G160949
TU182441 other downstream 619016 5456960 ~ 5512074 (-) True G160712
TU182444 other downstream 707577 5419119 ~ 5423513 (-) True G160713
TU181889 other downstream 2661928 3466353 ~ 3469162 (-) False G160213
TU183395 other upstream 562684 6701731 ~ 6704145 (-) True G161511
TU183401 other upstream 604887 6743258 ~ 6745350 (-) False G161515
TU183402 other upstream 604927 6743298 ~ 6745350 (-) False G161515
TU183403 other upstream 604927 6743298 ~ 6745350 (-) True G161515
TU185223 other upstream 786112 6924483 ~ 6925657 (-) True G163065

Expression Profile