RNA id: TU183237


Basic Information

Item Value
RNA id TU183237
length 449
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G161375
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6180956 ~ 6181404 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCCTGGACTAATGGCAGTGAGGAGGGGCTTCCTGTCACTCATCTGTTCCTGTCTGCTAAGCTCCGCCTCCCTCTGTTGGCTCCGTTTTTTCAGCTCAGTGTTGGATGGGAAAAACAGACCCACTGTCTGCGTCTGTGCATCTGCACACATGCGCAAACCCGCAGCTGGAGGCACAGTTGTAGATTCAGGTGCAGGAACTGCCTGCCAGGTGGCTGAGGACTGTATGAGAAAGAGCGGGAGAGAGGAAGATATAATACTGTACATTTTTATGAGCACCAAACAGGCTGTGTGCTGTACCTGATCAGCTTCCTGTGCGTCCTGTCCTTGGATTACTTGTGAGGGCGTCCTGGGTGGGCCGTCTAGGAAGACACCACAGCTACCACAGTAATTAGCATATGGGTGGCTGCTAGCTCCACACTGAGAACACGTCACAGTGCTGGCTTTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183219 lncRNA downstream 5010 6175586 ~ 6175946 (-) True G161359
TU183209 lncRNA downstream 61982 6114451 ~ 6118974 (-) True G161352
TU183218 lncRNA downstream 65220 6115495 ~ 6115736 (-) True G161358
TU183216 lncRNA downstream 83929 6096954 ~ 6097027 (-) True G161356
TU182891 lncRNA downstream 154940 6025636 ~ 6026016 (-) True G161099
TU183238 lncRNA upstream 863 6182267 ~ 6182496 (-) True G161376
TU183239 lncRNA upstream 12037 6193441 ~ 6193717 (-) True G161377
TU183242 lncRNA upstream 31827 6213231 ~ 6213574 (-) True G161380
TU183247 lncRNA upstream 38504 6219908 ~ 6220936 (-) True G161385
TU183265 lncRNA upstream 56913 6238317 ~ 6238605 (-) True G161393
CI01000030_06168725_06172057.mRNA mRNA downstream 8899 6168454 ~ 6172057 (-) True CI01000030_06168725_06172057
CI01000030_06162749_06165879.mRNA mRNA downstream 14441 6161812 ~ 6166515 (-) True CI01000030_06162749_06165879
CI01000030_06143122_06149273.mRNA mRNA downstream 29704 6142954 ~ 6151252 (-) True CI01000030_06143122_06149273
CI01000030_06131710_06138371.mRNA mRNA downstream 42585 6131090 ~ 6138371 (-) False CI01000030_06131710_06138371
CI01000030_06107092_06109831.mRNA mRNA downstream 69980 6106653 ~ 6110976 (-) False CI01000030_06107092_06109831
CI01000030_06184908_06193012.mRNA mRNA upstream 3209 6184613 ~ 6193012 (-) True CI01000030_06184908_06193012
CI01000030_06383887_06390119.mRNA mRNA upstream 202174 6383578 ~ 6390119 (-) True CI01000030_06383887_06390119
CI01000030_06405632_06428709.mRNA mRNA upstream 224164 6405568 ~ 6428709 (-) True CI01000030_06405632_06428709
CI01000030_06430857_06435176.mRNA mRNA upstream 249358 6430762 ~ 6435176 (-) True CI01000030_06430857_06435176
CI01000030_06442356_06446395.mRNA mRNA upstream 260952 6442356 ~ 6446395 (-) True CI01000030_06442356_06446395
TU183215 other downstream 42550 6133375 ~ 6133500 (-) True G161355
TU182698 other downstream 380530 5797297 ~ 5800426 (-) True G160949
TU182441 other downstream 668882 5456960 ~ 5512074 (-) True G160712
TU182444 other downstream 757443 5419119 ~ 5423513 (-) True G160713
TU181890 other downstream 2711794 3466353 ~ 3469162 (-) True G160213
TU183395 other upstream 519651 6701731 ~ 6704145 (-) True G161511
TU183401 other upstream 561854 6743258 ~ 6745350 (-) False G161515
TU183402 other upstream 561894 6743298 ~ 6745350 (-) False G161515
TU183403 other upstream 561894 6743298 ~ 6745350 (-) True G161515
TU185223 other upstream 743079 6924483 ~ 6925657 (-) True G163065

Expression Profile