RNA id: TU182698


Basic Information

Item Value
RNA id TU182698
length 877
RNA type TUCP
GC content 0.42
exon number 4
gene id G160949
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5797297 ~ 5800426 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTATCTGCCTGGCGACCGTATATAGATGGGAAAAGTCTGTCAAAACCATGAAACATAGCGGATCATTCTGAATAAATATTTCCCGCCACCTCACGATGCCCAAACTGCTTTTCTCGAAGATTCGGATCTACGAGTTCAAGGATCTCATTCGGAATAAGAAACAGCCAATAACGACCGTTTGACACACGGGCCAAAGCTAGCAGATCTGCTAGAAAATAGAGACTACCTGGCTGCCTTTCGTTCATTTCTCCAGTCTGAGTTTAGTGCGGAGAACATTGATTTTTGGCTTGCCTGCAGGGAATATAAGCAAATGACTTCATCTGGCAGTCTCTCTAACAAGGCAGCAGATATCTACAAAGAGTTTCTCCATCCCATGGCTCAAAAAGAGGTCAACATCGACCATCACACTCGTGAGAAGATCAAGATATCCTTGGTGAAGCCTGACCTCACTTGTTTTGATGAAGCCGAGATGCATATATACAGACTGATGGAGAAAGACTCCTGCCCACGGTTCCTCAAATCTGAGGCCTATCAGAACCTGAGGAACACAGCCAGGAAACCAATGTAGACCTATACTGTACCAATGACAACTATTTCACTGGAAAAAGGTTTCTTAATGAACCAGCGCACAGAAAGAGGACATATGCACGTGGTTTAGAGGAAATGACTGAGGAGAACAGAAAGTGTATGTGGTATGCTCAACTTCATTGGTTTTGAGTGATAAGATGAATGAGAAAAAATAAAAATGTCACACAGGAAATGATCTAGAATGAAGGTATATTACATGGTTTCCACTGTTATTTGACAGATGGGCTGTTTTGTTTTATGAAATGGGTGTTTTCTATAAAAGTTTTTTACAGTTAGTTGAGACCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182713 lncRNA downstream 21378 5772578 ~ 5775919 (-) True G160961
TU182688 lncRNA downstream 106765 5684834 ~ 5690532 (-) True G160942
TU182685 lncRNA downstream 114902 5681874 ~ 5682395 (-) True G160940
TU182566 lncRNA downstream 120013 5677082 ~ 5677284 (-) True G160833
TU182557 lncRNA downstream 134353 5661423 ~ 5662944 (-) True G160824
TU182705 lncRNA upstream 1017 5801443 ~ 5801968 (-) True CI01000030_05801355_05807277
TU182780 lncRNA upstream 53211 5853637 ~ 5854418 (-) True G161023
TU182767 lncRNA upstream 75941 5876367 ~ 5876944 (-) False G161013
TU182768 lncRNA upstream 76014 5876440 ~ 5878811 (-) True G161013
TU182796 lncRNA upstream 90983 5891409 ~ 5897974 (-) False G161034
CI01000030_05791222_05793350.mRNA mRNA downstream 3947 5791053 ~ 5793350 (-) True CI01000030_05791222_05793350
CI01000030_05784109_05788689.mRNA mRNA downstream 8608 5783816 ~ 5788689 (-) True CI01000030_05784109_05788689
CI01000030_05561747_05564633.mRNA mRNA downstream 232587 5561747 ~ 5564710 (-) True CI01000030_05561747_05564633
CI01000030_05519604_05542781.mRNA mRNA downstream 254490 5519546 ~ 5542807 (-) True CI01000030_05519604_05542781
CI01000030_05477128_05482150.mRNA mRNA downstream 315147 5477128 ~ 5482150 (-) True CI01000030_05477128_05482150
CI01000030_05801355_05807277.mRNA mRNA upstream 895 5801321 ~ 5807277 (-) False CI01000030_05801355_05807277
CI01000030_05996557_05996952.mRNA mRNA upstream 195600 5996026 ~ 5997542 (-) True CI01000030_05996557_05996952
CI01000030_06042392_06063112.mRNA mRNA upstream 241828 6042254 ~ 6063126 (-) True CI01000030_06042392_06063112
CI01000030_06070218_06078371.mRNA mRNA upstream 269716 6070142 ~ 6078378 (-) True CI01000030_06070218_06078371
CI01000030_06079733_06090776.mRNA mRNA upstream 279265 6079691 ~ 6090776 (-) True CI01000030_06079733_06090776
TU182441 other downstream 285223 5456960 ~ 5512074 (-) True G160712
TU182444 other downstream 373784 5419119 ~ 5423513 (-) True G160713
TU181861 other downstream 2304197 3361802 ~ 3478867 (-) False G160207
TU181889 other downstream 2328135 3466353 ~ 3469162 (-) False G160213
TU181890 other downstream 2328135 3466353 ~ 3469162 (-) True G160213
TU183215 other upstream 332949 6133375 ~ 6133500 (-) True G161355
TU183395 other upstream 900629 6701731 ~ 6704145 (-) True G161511
TU183401 other upstream 942832 6743258 ~ 6745350 (-) False G161515
TU183402 other upstream 942872 6743298 ~ 6745350 (-) False G161515
TU183403 other upstream 942872 6743298 ~ 6745350 (-) True G161515

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041558 False 904 mRNA 0.42 5 NC_007133.7 24287774 ~ 24297510 (-)
striped catfish (Pangasianodon hypophthalmus) TU225293 True 271 lncRNA 0.41 1 NC_047606.1 3497129 ~ 3497399 (-)
tiger barb (Puntius tetrazona) TU225293 True 3075 TUCP 0.33 5 NC_056720.1 12045469 ~ 12049531 (-)