Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU182713 |
| length | 722 |
| lncRNA type | antisense_over |
| GC content | 0.47 |
| exon number | 7 |
| gene id | G160961 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 5772578 ~ 5775919 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU182688 | lncRNA | downstream | 82046 | 5684834 ~ 5690532 (-) | True | G160942 |
| TU182685 | lncRNA | downstream | 90183 | 5681874 ~ 5682395 (-) | True | G160940 |
| TU182566 | lncRNA | downstream | 95294 | 5677082 ~ 5677284 (-) | True | G160833 |
| TU182557 | lncRNA | downstream | 109634 | 5661423 ~ 5662944 (-) | True | G160824 |
| TU182537 | lncRNA | downstream | 122707 | 5649419 ~ 5649871 (-) | True | G160806 |
| TU182705 | lncRNA | upstream | 25524 | 5801443 ~ 5801968 (-) | True | CI01000030_05801355_05807277 |
| TU182780 | lncRNA | upstream | 77718 | 5853637 ~ 5854418 (-) | True | G161023 |
| TU182767 | lncRNA | upstream | 100448 | 5876367 ~ 5876944 (-) | False | G161013 |
| TU182768 | lncRNA | upstream | 100521 | 5876440 ~ 5878811 (-) | True | G161013 |
| TU182796 | lncRNA | upstream | 115490 | 5891409 ~ 5897974 (-) | False | G161034 |
| CI01000030_05561747_05564633.mRNA | mRNA | downstream | 207868 | 5561747 ~ 5564710 (-) | True | CI01000030_05561747_05564633 |
| CI01000030_05519604_05542781.mRNA | mRNA | downstream | 229771 | 5519546 ~ 5542807 (-) | True | CI01000030_05519604_05542781 |
| CI01000030_05477128_05482150.mRNA | mRNA | downstream | 290428 | 5477128 ~ 5482150 (-) | True | CI01000030_05477128_05482150 |
| CI01000030_05357534_05377672.mRNA | mRNA | downstream | 394906 | 5357466 ~ 5377672 (-) | True | CI01000030_05357534_05377672 |
| CI01000030_05261553_05285669.mRNA | mRNA | downstream | 486467 | 5261296 ~ 5286111 (-) | False | CI01000030_05261553_05285669 |
| CI01000030_05784109_05788689.mRNA | mRNA | upstream | 7897 | 5783816 ~ 5788689 (-) | True | CI01000030_05784109_05788689 |
| CI01000030_05791222_05793350.mRNA | mRNA | upstream | 15134 | 5791053 ~ 5793350 (-) | True | CI01000030_05791222_05793350 |
| CI01000030_05801355_05807277.mRNA | mRNA | upstream | 25402 | 5801321 ~ 5807277 (-) | False | CI01000030_05801355_05807277 |
| CI01000030_05996557_05996952.mRNA | mRNA | upstream | 220107 | 5996026 ~ 5997542 (-) | True | CI01000030_05996557_05996952 |
| CI01000030_06042392_06063112.mRNA | mRNA | upstream | 266335 | 6042254 ~ 6063126 (-) | True | CI01000030_06042392_06063112 |
| TU182441 | other | downstream | 260504 | 5456960 ~ 5512074 (-) | True | G160712 |
| TU182444 | other | downstream | 349065 | 5419119 ~ 5423513 (-) | True | G160713 |
| TU181861 | other | downstream | 2279478 | 3361802 ~ 3478867 (-) | False | G160207 |
| TU182698 | other | upstream | 21378 | 5797297 ~ 5800426 (-) | True | G160949 |
| TU183215 | other | upstream | 357456 | 6133375 ~ 6133500 (-) | True | G161355 |
| TU183395 | other | upstream | 925136 | 6701731 ~ 6704145 (-) | True | G161511 |
| TU183401 | other | upstream | 967339 | 6743258 ~ 6745350 (-) | False | G161515 |
| TU183402 | other | upstream | 967379 | 6743298 ~ 6745350 (-) | False | G161515 |
