RNA id: TU182887


Basic Information

Item Value
RNA id TU182887
length 515
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G161095
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6019318 ~ 6019832 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTATCAAGCGTCTTTTTCACCTGCTCAAACGTCGGCCTCATGGTGACATTGTGGGACCAGCATCTCTTTATCAGCTGAGTGAAATTTGACTAAGAACACTGAGTGCTTTTCATTTATCCACAGTTATCTCATGCCTCATCAAGAGTAAATCAATGAAGTAACTGGTTTTCAACAAAAGGAAGTGTGCTTAAGTGCAATGCATCGGTTACATCAATACAAACCTCACAGTAATCATCTGGATCTGGGCAGTCATTGTCTGATTTCCCAGCCTCCAGTTTGGGAAGTGCTGGGCGCCACATGACATCAAGCTTCACTGAATCTGCCTGTTCCTGCTCATGTGACAATAATTCCACTTCTTATCGTCACCTCTTATGCAAAAAAAAAAAAAAAAAGTCTAAAACCCCAAAATCTTCCTGATCCTTGTATACTTACTGAAATTAGGTCACTGCGAGTGGCGATTTCCACCAAGATAATAGAGTAGCTTGAGATACGGGAAGAAAAGACAAATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182886 lncRNA downstream 550 6018446 ~ 6018768 (-) True G161094
TU182885 lncRNA downstream 1007 6017501 ~ 6018311 (-) True G161093
TU182878 lncRNA downstream 12417 6006545 ~ 6006901 (-) True G161089
TU182877 lncRNA downstream 13682 6004543 ~ 6005636 (-) True G161088
TU182871 lncRNA downstream 40530 5975558 ~ 5978788 (-) True G161083
TU182888 lncRNA upstream 447 6020279 ~ 6020758 (-) True G161096
TU182889 lncRNA upstream 1726 6021558 ~ 6021864 (-) True G161097
TU182891 lncRNA upstream 5804 6025636 ~ 6026016 (-) True G161099
TU183216 lncRNA upstream 76382 6096954 ~ 6097027 (-) True G161356
TU183218 lncRNA upstream 86943 6115495 ~ 6115736 (-) True G161358
CI01000030_05996557_05996952.mRNA mRNA downstream 21776 5996026 ~ 5997542 (-) True CI01000030_05996557_05996952
CI01000030_05801355_05807277.mRNA mRNA downstream 212041 5801321 ~ 5807277 (-) False CI01000030_05801355_05807277
CI01000030_05791222_05793350.mRNA mRNA downstream 225968 5791053 ~ 5793350 (-) True CI01000030_05791222_05793350
CI01000030_05784109_05788689.mRNA mRNA downstream 230629 5783816 ~ 5788689 (-) True CI01000030_05784109_05788689
CI01000030_05561747_05564633.mRNA mRNA downstream 454608 5561747 ~ 5564710 (-) True CI01000030_05561747_05564633
CI01000030_06042392_06063112.mRNA mRNA upstream 22422 6042254 ~ 6063126 (-) True CI01000030_06042392_06063112
CI01000030_06070218_06078371.mRNA mRNA upstream 50310 6070142 ~ 6078378 (-) True CI01000030_06070218_06078371
CI01000030_06079733_06090776.mRNA mRNA upstream 59859 6079691 ~ 6090776 (-) True CI01000030_06079733_06090776
CI01000030_06092897_06102203.mRNA mRNA upstream 73008 6092840 ~ 6102631 (-) False CI01000030_06092897_06102203
CI01000030_06107092_06109831.mRNA mRNA upstream 86821 6106653 ~ 6110976 (-) False CI01000030_06107092_06109831
TU182698 other downstream 218892 5797297 ~ 5800426 (-) True G160949
TU182441 other downstream 507244 5456960 ~ 5512074 (-) True G160712
TU182444 other downstream 595805 5419119 ~ 5423513 (-) True G160713
TU181889 other downstream 2550156 3466353 ~ 3469162 (-) False G160213
TU183215 other upstream 113543 6133375 ~ 6133500 (-) True G161355
TU183395 other upstream 681223 6701731 ~ 6704145 (-) True G161511
TU183401 other upstream 723426 6743258 ~ 6745350 (-) False G161515
TU183402 other upstream 723466 6743298 ~ 6745350 (-) False G161515
TU183403 other upstream 723466 6743298 ~ 6745350 (-) True G161515

Expression Profile