XLOC_021182 (nptxrb)


Basic Information

Item Value
gene id XLOC_021182
gene name nptxrb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 25025136 ~ 25033105 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041598
CGCTTAGCAACACGAGAGGAGGAGGACCAGCATCATCTGCTGCGAGCGGAGGAAAAACAGCCGATGCATCGACCTTCACTTCATCCAGCCCTGCTCCTGTTACCGAACTGCGGGATTTGACcttaatttctattttataaaACGTCACACATCTGTAAAACTCGATTTAACGCTATAATATATATTCCGATCGCCGTGATGAAGTTCGTCGTGGTTATAGTTTCCGCTGGCCTTTTGGCTTTTCTCGGCGCGGTCATCTGCATCATCGCCAGCGTGTACCGGCGCTCATCAGCCGCCGCGCCCCAAGGGCTCTCCGACAACCGCTCGCTGTCGCTCCTGGAGCCGCTGCCGGGATCGGTAGCGCACGCTGGGCCGCTCGGCGCTCTCCATGGTGCTGAATCTTACGAAGGAGAAGGTTTGGACATCGGCCTCGAGATTCCATCGATCAATGAGCTGAGCACCGGGGACGTGACCAGGCCGAGTCCTAAACAATTCACCCTCAATCGACTCATCTGCACCCCCGTCCCACTGAGCGACTGCAAATCAAGAGGTTTGAGGGAACAATCCGACGATGCGTTCGCCGAGGAGGAGGACTGGAGCCTCCGCACCACCGCCGAGGAGCTCCGGCAGATCGTCATGCAACAAAACGATCAGATCCTCATGGACCAGAGAACCATCACCGAGCTCACCGGAAAGCTATCGGAGTGTGAGAACGGGCTGGAGGAGCGGACCCTGAACGAGCGCAGTATGGGAGTGTGGGCGGGCGGCCGTCGCCACATGGCCGGGGATGATGTGAGCGGCTCGGTTGCAGTACAGCTGCAGACCGCGCGGGCTGTGGAGGAGCTGGAGAGGGCGATACTTCAGCTCAAAGACCGCATAGAGAAGTTGGAGATGGAAATAGGCCCTGCAGcgataaaccacactgaacatACTGTGAGCACACTGGGGAGCATAGTGGTGGGCGAGCCAGGCAGGCCTGTGGAGGATCTGGAGGGAGAGCTGGAAAAGAAGATTCGGCTGCTGGAGAAGGAGAGGAAGAACCTCCGCAAAGAGACCCAGAGCCACCACCAGCATATTGACCAGGGAATCAACACCCTGCAGGAGCGTATTGCAGAGCTGGAACAAAGTCTTACAGATTACAGTTATCCACAAGGGTATAAACTTTCCTTCCCTGTGAGGACAAACTACATGTACGGGCTTGTCAGGCGGAATATTCCAGAAATGTATGCCTTCACAGCGTGTCTGTGGCTTAAGCCTGCTGAGAGTGGAATTGGTACACCATTCTCTTATGCTGTACCAGAACAACCCAATCAACTCGTGCTGTTGCAGGGCATTCATAATCCTGCAGAACTACTCATCAATGATAAGGTGGCACAGTTGCCTCTAtctttgccaaaaggcatctggcAGCACATATGTGTGAGCTGGACTCTACGGGATGGAGTTTGGAAAGCATATCAAGGTGGAAAGATGAGAGGACGGGGTGACGGTTTGTCTGCATGGCACCCGATCAAATCTGGGGGCGTCTTGGTGTTGGGACAGGAACAGGATACCCTTGGTGGGCGGTTTGACGCATCCCAGGCTCTTGTTGGGGAACTTTCATTGTTTAACCTGTGGGACCGAGTGTTGTCACCAACTGAGGTGGCCGCTCTGGCATCTTGCGCAGAATCACCACGCCTGGGGAATGTGGTGCCCTGGACTGACAGAGACGTGGACGTGTTTGGCGGGGCCGTGAAGGATCCTGTGGACCCCTGCATTAAGAGCTCCCATCCCCGGCAGTGA

Function

symbol description
nptxrb Orthologous to human NPTXR (neuronal pentraxin receptor).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-595 Orthologous to human NPTXR (neuronal pentraxin receptor).

Ensembl:

ensembl_id ENSDARG00000053375

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041598 True 1782 mRNA 0.55 5 25025136 25033105

Neighbor

gene id symbol gene type direction distance location
XLOC_021181 AL929032.1 coding downstream 16379 25007941 ~ 25008757 (-)
XLOC_021180 si:dkey-179j5.5 coding downstream 32604 24990337 ~ 24992532 (-)
XLOC_021179 dnal4b coding downstream 40360 24973865 ~ 24984776 (-)
XLOC_021178 fam20cl coding downstream 57661 24954103 ~ 24967475 (-)
XLOC_021177 si:dkey-4c23.3 coding downstream 78253 24888649 ~ 24946883 (-)
XLOC_021183 polr3f coding upstream 1635 25034740 ~ 25043103 (-)
XLOC_021184 BX294165.1 coding upstream 12587 25045692 ~ 25049205 (-)
XLOC_021185 kat14 coding upstream 33005 25066110 ~ 25078718 (-)
XLOC_021186 NA coding upstream 100945 25134050 ~ 25135235 (-)
XLOC_021187 NA coding upstream 308638 25341743 ~ 25344648 (-)
XLOC_021173 BX539332.1 non-coding downstream 220849 24798458 ~ 24804287 (-)
XLOC_021169 dre-mir-725 non-coding downstream 658864 24366193 ~ 24366272 (-)
XLOC_021163 BX649608.1 non-coding downstream 774141 24250187 ~ 24250995 (-)
XLOC_021161 NA non-coding downstream 829478 24189138 ~ 24195658 (-)
XLOC_021188 NA non-coding upstream 327013 25360118 ~ 25360570 (-)
XLOC_021189 NA non-coding upstream 367637 25400742 ~ 25402438 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_06162749_06165879 NPTXRB coding CI01000030 null 6161812 ~ 6166515 (-)