XLOC_021180 (si:dkey-179j5.5)


Basic Information

Item Value
gene id XLOC_021180
gene name si:dkey-179j5.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 24990337 ~ 24992532 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041596
GTAAAGTCTATATGCAGTGCTGAGGACGACAGCAGAATCATGGGCTCTCTCAGTTTAGTTCTTACCTTAATGCTTATGAACTGCAGTCTGCTGATATCTGCAGATGATTGTGATGGACCAACTGACGTCGTAACTGCATGCGAGGGGTTTCTCCTGTATCTGACCTGTCCAAAACATCATAAGATCACGATAATTGATGCACTCTATGGGCGTAAAACTAAAGCAATCTGCTATGATCAACCTCAAGACCAGCTCCAGAACACCAACTGCTATTCTCCTCACGCACTGCACATTGTGTCAGAAAGGTGTAATGGGCATGTGCACTGTGCCATACATGCCACCAACAGTGTATTCTCTAACCCGTGTGTGCACACATACAAATATCTGAGAGTCAAATACTGCTGCGAGCATCATAGGAGCTGATCTTGTGTATTTAGATTCTCCATTTCTATGCTTCCACATGGGCTGCATAAAtacaaaatacacttttaaggTTTCTCTTCTAAAGACTAAGCATGGTTGTGTAACAAAAGTCATGTAGTGACATGGGATACAAGCAGATTTGCTGTTCTGATTTCTGCCTTACTGTGCAGGTTTCTTTTCATACAGTTAATATTCCTATTATGCTCAGGTGGAAGTTTCTCAATAAAAatgaatgatgtttttttttttttcttttttgtggcATTTTAAACCTTGTGTTACTTCAAATAAAGCACATAAAGGCATAATTCATATGATACCATATGCCCAACATGGTTCAATTTGATAAAGGCAATAGTAGCACCTATACAGACCATTGCAGAAATGTGCATAACTATGCAGAACATGTAGAATTGTGTTggaaaacataaaaaagagaAGGTTATTACATGCCTTTGAATGTGCTCCACAGGGACTTTTAATTTTCCTTAAGTCCACCGAGCACTTCTATTTACACTTTCCTGATGCAAGCAATTAGCGAGG

Function

symbol description
si:dkey-179j5.5 Predicted to enable carbohydrate binding activity.

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-320 Predicted to enable carbohydrate binding activity.

Ensembl:

ensembl_id ENSDARG00000074538

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041596 True 966 mRNA 0.39 6 24990337 24992532

Neighbor

gene id symbol gene type direction distance location
XLOC_021179 dnal4b coding downstream 5561 24973865 ~ 24984776 (-)
XLOC_021178 fam20cl coding downstream 22862 24954103 ~ 24967475 (-)
XLOC_021177 si:dkey-4c23.3 coding downstream 43454 24888649 ~ 24946883 (-)
XLOC_021176 vtg2 coding downstream 109513 24869690 ~ 24880824 (-)
XLOC_021175 vtg7 coding downstream 132287 24851227 ~ 24858050 (-)
XLOC_021181 AL929032.1 coding upstream 15409 25007941 ~ 25008757 (-)
XLOC_021182 nptxrb coding upstream 32604 25025136 ~ 25033105 (-)
XLOC_021183 polr3f coding upstream 42208 25034740 ~ 25043103 (-)
XLOC_021184 BX294165.1 coding upstream 53160 25045692 ~ 25049205 (-)
XLOC_021185 kat14 coding upstream 73578 25066110 ~ 25078718 (-)
XLOC_021173 BX539332.1 non-coding downstream 186050 24798458 ~ 24804287 (-)
XLOC_021169 dre-mir-725 non-coding downstream 624065 24366193 ~ 24366272 (-)
XLOC_021163 BX649608.1 non-coding downstream 739342 24250187 ~ 24250995 (-)
XLOC_021161 NA non-coding downstream 794679 24189138 ~ 24195658 (-)
XLOC_021160 NA non-coding downstream 914052 24074089 ~ 24076285 (-)
XLOC_021186 NA non-coding upstream 141518 25134050 ~ 25135235 (-)
XLOC_021187 NA non-coding upstream 349211 25341743 ~ 25344648 (-)
XLOC_021188 NA non-coding upstream 367586 25360118 ~ 25360570 (-)

Expression


Co-expression Network