XLOC_021179 (dnal4b)


Basic Information

Item Value
gene id XLOC_021179
gene name dnal4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 24973865 ~ 24984776 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041594
CCCACTATCCAATCACAACACGCGACGCATCACAAGGGGTGGagttacacacacagctgtgtcGGCTAGGAATGGTTGCCATGGTGGACATGTCTCCATAGCGACGTCGTTTTAAGCACATAAAACTTGTTTTCTTTAATTACGGTAGGTAAATGTCTCGTTATGCTCTCGTTTTCGGTTATTTGCATTGATAGACACACATATAgcgaaaaataaacattaatagaaATGAAAACTAATAACCCAGCTATACAAGTTAGCCAAAGATGCTAGGAAGCTAGCAGGTTTCATTATAACTGCTAACGTTATAGTGTTCGTGTTTTTAACTAGGCTAACGTAAATGGTCACTTCATAAGCAAGTATAACTAACGTTACCAGCAAGCATCATAAACTATAATTTTATCCAAAATTGATGTCAACGTGAATTACCATGATTTGGTATGGTAACATCATACCATGGTAATGTATACCTTGTAacgttacaggtttttagctttctacaaaatatcttctttcatgttcaacagaagaatttTGGTGTAAAAAGTATCTGTGCCCAAAGCACCATAATATTACTGTCATCCACATTCTGAAGCTATAACGTTAATACAAATATGAATCTTagatttattaaattagatttttcatattgttatttattttttataagtgaCATTAATCTTGTATATATTTCTCTCACCTAGGGCTGAACATAATGGCAGATACGGTTGATGGCAAGAAGGAAGAGGCAGATTATAAGAGACTACATAACTTTCCTCTTATAAGGCATACTGATATGCCTGAAGAGATGCGGGTAGAGACCATGGAGCTCTGTGTTACAGCGTGTGAAAAGTTTGCCACTAATAATGAGaGCGCAGCTAAAATGATAAAGGAGTCGATGGATAAGAAGTTTGGGAGCTCTTGGCATGTGGTGATTGGCGAAGGCTTCGGGTTCGAAATCACACATGAAGTCAAGAACCTGCTTTACATGTTCTTTGGTGGAAGTTTGGCGGTTTGTGTATGGAAATGTTCCTAACTCGAGCACTCAAAGACTTTTCATGAGCTTCCAGACTTTAAAGTGGATATGCCACATGGACATGGTTCTATATATTCAATACCAACATGATCTCCTGGAAAGATGTAACTGTTTTACAATGTGgcaatattggtttatttatgcaAGTGGTCTGTGGGAAAATGTATGAACTAGAGCTTACAAAATTCAAAAGAATCAGCCACAAACTTAACTTCAatagttacaaattgccgtgtgATTATGTTGTCAACTGAACAGGGTGCATTAATTTACGTCATTTTGAATGTAGCATTCTATGATTTTATCTCAGTTCTCTCAAAACCGCACACCATCATAGGTTTTATTGTCCATTTAAGCCACTCTTTCTCCTGTCTTTTATCTGTCCACCCTCTGTTTCTTATTGTTAtgtcctttcatttttttctgaagGATAGAGTATTTTTATAAGacaaaaatgatattttttaattactatatATGAACACATTTGATCAGTTTTAAAACTTCAGATATTTTATAGGAGGTGTACGTTTTGCACAGCtctaatgtgtgtttgtttttattaatgactattacGTCATGTTCTTGTGTAATAAAACCCCATTAGTGAAGTGAAACTCGTTTTTCATGCTGTCTTACACCACTGAGATGACAGGAAattgatttaaataatatatgCCGAATGCTTTCCCCAAAAGCAGCGCTTAAAATGTCtagaatgaaatatttatacttgcTGAAGTCAGTGAAGAAAATGCCTTATTTCGCTGGTCTGAACCAAGTCGTTTGTCTGTTAAGTTAATAGATTTAATGGATCACAATAGATATGTATTAAGAAAGTAAGTGGATTTATAGAGCATAGGTTTGCTTTATTGTCAGATTATTGCACAAGGGACTGTTGAAATCTGGCTCAGAGCATGTTTACACACacgcagacgcacacacacattgacCTACTGTCAGGTTAGTCTGCCCTGCATACTCATAAACACACATTAACCTTTTTTCCCCTCACCTTTTCACTTTTAAATAAGCATCCCTGCAGCCGTAAGGACAGTTTTCTTTGCATTTGGCTTCTCATATGATACTTAAAGTAAAACTGCACTCAAATATTCTTTCATGTTTATCTAGAAGCTTTTTTGTGAAGTTTAGTAGAAGATTTAAGCTGCTCTTTTTCCCCATTGAATCAGAAAGGAATTTctaatttgatttaaataaaaatatcataagGTCGGCACCAATGGTGTAGTGGTAGCGCGTTGATACAAgcactccggtgctcacggcAACCCAAGTTTGATTACAGCCTTGAGGTCCTATGCCGGTCCTTCCCCCTCTCTCGGCTCCCCacgctttcctgtcaatactctactgtcctatccaaggtgaaaaccctaaaaaaaatcattctacaaatatatatctatatcataAGCAACCAATCTGCCATCCCTTAATTCATAAATGCATTGAGTATTTCAGTGTGCACTTTGAGTggattttaaattcatttaaaacatctttaactaattatttattaaatggtaccaaagctttttttttttaaatattgacttAGTTTGACCAAAATCTAACCTTAACATTTCAGGAAGGATTTGTGTTACAATTTCACTGCGTAGTTCACCTAGAAATGAAAATTCGGTCATTAATTAATCACCCTTATGTCATTTCAAACACTAGAtacctttgttcatctttaagcacaaatgaagatattttgaataaaatatgagCATTTTCTGACCTTCTCTAGAAAGCAATGATCGCCCAGAAAGATATCTAAAAC
>TCONS_00041595
gttacacacacagctgtgtcGGCTAGGAATGGTTGCCATGGTGGACATGTCTCCATAGCGACGTCGTTTTAAGCACATAAAACTTGTTTTCTTTAATTACGGGCTGAACATAATGGCAGATACGGTTGATGGCAAGAAGGAAGAGGCAGATTATAAGAGACTACATAACTTTCCTCTTATAAGGCATACTGATATGCCTGAAGAGATGCGGGTAGAGACCATGGAGCTCTGTGTTACAGCGTGTGAAAAGTTTGCCACTAATAATGAGaGCGCAGCTAAAATGATAAAGGAGTCGATGGATAAGAAGTTTGGGAGCTCTTGGCATGTGGTGATTGGCGAAGGCTTCGGGTTCGAAATCACACATGAAGTCAAGAACCTGCTTTACATGTTCTTTGGTGGAAGTTTGGCGGTTTGTGTATGGAAATGTTCCTAACTCGAGCACTCAAAGACTTTTCATGAGCTTCCAGACTTTAAAGTGGATATGCCACATGGACATGGTTCTATATATTCAATACCAACATGATCTCCTGGAAAGATGTAACTGTTTTACAATGTGgcaatattggtttatttatgcaAGTGGTCTGTGGGAAAATGTATGAACTAGAGCTTACAAAATTCAAAAGAATCAGCCACAAACTTAACTTCAatagttacaaattgccgtgtgATTATGTTGTCAACTGAACAGGGTGCATTAATTTACGTCATTTTGAATGTAGCATTCTATGATTTTATCTCAGTTCTCTCAAAACCGCACACCATCATAGGTTTTATTGTCCATTTAAGCCACTCTTTCTCCTGTCTTTTATCTGTCCACCCTCTGTTTCTTATTGTTAtgtcctttcatttttttctgaagGATAGAGTATTTTTATAAGacaaaaatgatattttttaattactatatATGAACACATTTGATCAGTTTTAAAACTTCAGATATTTTATAGGAGGTGTACGTTTTGCACAGCtctaatgtgtgtttgtttttattaatgactattacGTCATGTTCTTGTGTAATAAAACCCCATTAGTGAAGTGAAA

Function

symbol description
dnal4b Predicted to enable dynein intermediate chain binding activity and dynein light intermediate chain binding activity. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoplasm and microtubule. Predicted to be part of dynein complex. Human ortholog(s) of this gene implicated in congenital mirror movement disorder. Orthologous to human DNAL4 (dynein axonemal light chain 4).

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:2000582 positive regulation of ATP-dependent microtubule motor activity, plus-end-directed biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0030286 dynein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0045505 dynein intermediate chain binding molecular_function
GO:0003774 motor activity molecular_function
GO:0051959 dynein light intermediate chain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-510 Predicted to enable dynein intermediate chain binding activity and dynein light intermediate chain binding activity. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoplasm and microtubule. Predicted to be part of dynein complex. Human ortholog(s) of this gene implicated in congenital mirror movement disorder. Orthologous to human DNAL4 (dynein axonemal light chain 4).

Ensembl:

ensembl_id ENSDARG00000088841

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041594 False 2843 mRNA 0.36 3 24973865 24984776
TCONS_00041595 True 1050 mRNA 0.37 4 24975055 24984733

Neighbor

gene id symbol gene type direction distance location
XLOC_021178 fam20cl coding downstream 6390 24954103 ~ 24967475 (-)
XLOC_021177 si:dkey-4c23.3 coding downstream 26982 24888649 ~ 24946883 (-)
XLOC_021176 vtg2 coding downstream 93041 24869690 ~ 24880824 (-)
XLOC_021175 vtg7 coding downstream 115815 24851227 ~ 24858050 (-)
XLOC_021174 vtg6 coding downstream 155799 24811396 ~ 24818066 (-)
XLOC_021180 si:dkey-179j5.5 coding upstream 5561 24990337 ~ 24992532 (-)
XLOC_021181 AL929032.1 coding upstream 23165 25007941 ~ 25008757 (-)
XLOC_021182 nptxrb coding upstream 40360 25025136 ~ 25033105 (-)
XLOC_021183 polr3f coding upstream 49964 25034740 ~ 25043103 (-)
XLOC_021184 BX294165.1 coding upstream 60916 25045692 ~ 25049205 (-)
XLOC_021173 BX539332.1 non-coding downstream 169578 24798458 ~ 24804287 (-)
XLOC_021169 dre-mir-725 non-coding downstream 607593 24366193 ~ 24366272 (-)
XLOC_021163 BX649608.1 non-coding downstream 722870 24250187 ~ 24250995 (-)
XLOC_021161 NA non-coding downstream 778207 24189138 ~ 24195658 (-)
XLOC_021160 NA non-coding downstream 897580 24074089 ~ 24076285 (-)
XLOC_021186 NA non-coding upstream 149274 25134050 ~ 25135235 (-)
XLOC_021187 NA non-coding upstream 356967 25341743 ~ 25344648 (-)
XLOC_021188 NA non-coding upstream 375342 25360118 ~ 25360570 (-)

Expression


Co-expression Network