XLOC_021173 (BX539332.1)


Basic Information

Item Value
gene id XLOC_021173
gene name BX539332.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 24798458 ~ 24804287 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041574
GCGAGTCAACAGATGAACCTTGTTCCTGAATTTGCCCATGATAAGACCTACAAGTACAAGTATGAGGCTCTGCTTTTGGGAGGTCTTCCTCAAGAAGGTCTGGCCAGAGCAGGTATTAAAGTCAGCAGCAAGGTTCTCCTCAGTGCCGTGACTGAGAACACCTACCTGATGAAGCTTATGGATCCTCTACTCTACGAGTATGCTGGCACTTGGCCCAAGGATTCATTTGTCCCTGCCACTAAGCTCACCTCAGCACTGGCTGCTCAGCTTCAGATCCCCATCAAGTTTGAGTACGCTAATGGTGTGGTTGGCAAGGTTTTCGCCCCAGCAGGAGTCTCTCCAACAGTCATGAACCTGCCCAGAGGTATCCTCAACATCCTTCAGCTCAACCTCAAGAAGACCCAGAACATCTACGAGCTGCAAGAGGCTGGAGCTCAGGGTGTGTGCAGGACACACTATGTCATCAATGAGGATCCAAAAACCAACCACATTATTGTCACCAAGTCTAAGGATCTTGGATACCTAATAGAATTAAAATATCTACCCACTAAAAATGTTAAGAGTCAAATCACCTACCTTTCTCTCATCAGAGGGTCAAGAGTCTGATTGAAACGGCTACTTATAACTACATCATGAAACCAGCTGACAATGGTGCACTGATCGCTGAGGCAACAGTTGAGGAAGTGTATCAGTTCTCACCCTTCAATGAGATTCATGGTGCTGCAATGATGGAAGCAAAACAAACCTTGGCTTTTGTTGAGATTGAAAAGACCCCTGTCGTTCCAATCAAAGCTGATTACATGCCCCGTGGATCCCTGCAATACGAGTTTGCAACTGAGATTCTTCAGGCCCCAATTCAACTCATGAAGATCAGTGATGCACCTGCCCAGATTGTTGAGTTCCTGAAGCACTTGGTTGCAAACAATAAAGATATGGTCCATGATGATGCTCCACTTAAGTTTGTTCAGCTTGTCCAGCTTTTTCGCTTTGCCACCTTGGACAAAATTGAGACAATCTGGACTCAATTCAAGGACAAACCAGTTTACAGgCGCTGGCTTCTGGATGCTCTTCCTGATGTTGGTACACCAGTTATAATAAAATTCATCAAGGAGAAGTTTCTAGCTGGTGAATTTACCACTCCCGAGTTCATTCAGACTCTTGTGATTGCTCTGCAAAGGGTTTCTGCTGATCTTGAAACCATCCAAATGACAGCTAGTTTGGCTATGCACAAGAAACTTTCCACTGTTCCAGCTCTGCGTGAAGTTGCCATGCTTGGATATGGTTCCCTGATTGCCAGGCACTGTACTGCAGTTCCAACTTGCCCTGCCGAGCTCCTCAGGCCCATCCATGAGATTTCCACAGAGGTCGTTTCTAAGAATGACCTTCCTGAAATCACTTTGGCTCTGAAAGTTATGGGCAATGCTGGTCACCCTTCAAGTCTTAAACCCATCATGAAGCTCCTACCTGAACTGAGAACTGCAGCTAATGCTTTGCCCATTAAAGTCCAGGTTGATGCCATCTTGGCCCTGAGGAACATTGCCAAGAAAGAGCCCAAACTGGTTCAGCCTGTTGCCCTGCAGCTTGTTTTGGACAGGGCTCTCCACCCAGAGGTGCGCATGGTTGCTTGTATTGTGCTGTTTGAGACCGAGCCTTCAGTGGCTCTCGCCTCCAGTCTTGCTGGAGCTTTGAGGACTGAGCCAAACATGCATGTTGCAAGCTTTGCCTATTCCCACATCAAGTCCTTGACCAGAATCACTGCTCCTGATATGGCATCTGttgctgGTGCAGCTAATGTTGCCATCAAGCTTATGAACTGCAAGCTGGACAGACTTAACTACTGTTACAGCAGAGCTTTTCAGATGGACTATTATTATACTCCTCTTATGATTGGAGCTGCTGGTAGTGCCTATATGATCAATGATGCTGCCACCATCTTGCCCAGAGCTGTTGTAGCTAAAGCTCGTGCCTACCTGGCTGGAGCCGCTGCTGATGTTATTGAGTTTGGTGTGAGAACTGGAGGAATCCATGAAGCTCTTCTAAAATCTCCTGCTGCAGATGAAAGTGTTGACCGTATCACAAAGATTAAGCGTACACTGAGAGCACTCACAAACTGGAAGGCTTTGCCAACTGATAAACCACTTGCTTCAGCCTATGTTAAAGTATTTGGACAAGAAGTGGCTTACAGGTATGTCAACTTTGACAAGACCATCATTGAAGAAGTCATACTGATGGTTACTGGACCCAAACCACGTGCACTGCTAAAGGAGGCTCTTAAAGCTTTGCAGGAAGGAGTTGCCTTCCAGTATGCTAAACCTTTGCTTGCAGCTGAAGTGCGTCGTATCTTGCCAACTGCAGTTGGTGTGCCCATGGAGTTCAGTTGGTACACTGCTGCAGTTGCTGCTGCAAGTGTCAATGTTCAGGCCACCATTACACCTGCTCTCCCTGAGAAATTGGAGTCCATGACTTATGAGCAACTGAAGAAGACTGATGTTCAGTTCCAAGCTGAAGCTAGACCAAGTGTTGCTCTCCAGACATTTGCTGTGATGGGAGTTAACACTGCCTTCATCCAAGCTGCTGTTATGGCAAGAGGAAAGATCCGTACAATTGCACCCGGAAAAGTGGCAGCAAGAGCAGACATTCTCAAGGGCAACTACAAGGTGGAGGCTCTGCCTGTTGAACTTCCTGAACACATTGCTTCTGCAAGCTTTGAGACTCTTGCCGTGATCAGAAACATTGAAGACCACAGTGCTGAAAGGTCTGTTCCCCTGGTACCTGAATTGTCTCTGCAAAACTCCCAGGCATCTTATGCTGGTGATTTGtcctcTGAGATGTCACCTGATGCTTCAGTGAGAGCTCCTGCTCCATTTGACAGGACCCTCTGTTATGCTGTCCCATACATTGAAATCAAGGGATGTGTTGAGGTGCACTCTCACAATGCTGCTTTTATCAGAAATTCCACTCTTTTCTACATAATTGGACACCATTCAGTCCGTGCTGCAGTGGCAAGAGgcTGTAGCTGAAGGTCCTGCAGATGAAAGGCTGGAGTTTGAAGTTCAAGTTGTACTTGGCACCCCATAGTGCCACAAAGGACACGAGCAGTGGAAGTGCTGCAGCTAGCTTTGAGCAAATGCAGAAACATAATACTGGCTGCTTACTTTGACAAACCAACTGCAAAAGTGCAACTGATAGTTTCCTCCATTGCTGAAAATGACAACATGAAGATCTGTGCTGATGGTGCTCTATTAAGCAAGCACAAAGTCGGCAAGTTTTCTTGGGGTGCGGATTGCAAACAGTATGCAGTCTTTGCTAAAGCTGAAGCTGGTGTCCTGGGTGAATTCCTTGCTGCCTGTCTAGAAGTGGAATGGGAGAGACTGCCAAAAATTTGAACCACCTATGCTAAAAAGCTTTCTAAACACATCCTCAAGGCAGCTTATGAGACACAATTCAGGTTTGAAAGAGCAACGAACAGCGAGAAAGAGATTGAACTGACTGCAGCCTTGTCATCTCAGAGGTCCTTGAATTTCATTGCTAGGATTCCAGAGATTACAATGTCAAAAAGGGATATTTATCTCCCCGTTGCTGTTCCCATCAATCCAGATGGAACTTTTTCCATTAATGAGGACTTTCTCTCCTGGATTCACAAGTATATCAAGGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093425

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041574 True 3655 unprocessed_pseudogene 0.46 25 24798458 24804287

Neighbor

gene id symbol gene type direction distance location
XLOC_021172 vtg4 coding downstream 6953 24784013 ~ 24791505 (-)
XLOC_021171 vtg5 coding downstream 40673 24751101 ~ 24757785 (-)
XLOC_021170 vtg1 coding downstream 60270 24730965 ~ 24738188 (-)
XLOC_021169 dre-mir-725 coding downstream 432186 24366193 ~ 24366272 (-)
XLOC_021168 uts2d coding downstream 485157 24311193 ~ 24313301 (-)
XLOC_021174 vtg6 coding upstream 7109 24811396 ~ 24818066 (-)
XLOC_021175 vtg7 coding upstream 46940 24851227 ~ 24858050 (-)
XLOC_021176 vtg2 coding upstream 65403 24869690 ~ 24880824 (-)
XLOC_021177 si:dkey-4c23.3 coding upstream 84362 24888649 ~ 24946883 (-)
XLOC_021178 fam20cl coding upstream 149816 24954103 ~ 24967475 (-)
XLOC_021163 BX649608.1 non-coding downstream 547463 24250187 ~ 24250995 (-)
XLOC_021161 NA non-coding downstream 602800 24189138 ~ 24195658 (-)
XLOC_021160 NA non-coding downstream 722173 24074089 ~ 24076285 (-)
XLOC_021159 AL935303.1 non-coding downstream 828749 23969080 ~ 23969709 (-)
XLOC_021181 AL929032.1 non-coding upstream 203654 25007941 ~ 25008757 (-)
XLOC_021184 BX294165.1 non-coding upstream 241405 25045692 ~ 25049205 (-)
XLOC_021186 NA non-coding upstream 329763 25134050 ~ 25135235 (-)
XLOC_021187 NA non-coding upstream 537456 25341743 ~ 25344648 (-)
XLOC_021188 NA non-coding upstream 555831 25360118 ~ 25360570 (-)

Expression


Co-expression Network