XLOC_021174 (vtg6)


Basic Information

Item Value
gene id XLOC_021174
gene name vtg6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 24811396 ~ 24818066 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041575
ACAAACCACCAGCAATGAGAGCTGTTGTGCTTGCCCTGACGGTAGCCCTTGTGGcgAGTCAACAGTTCAACCTTGTTCCCGAGTTTGCCCATGATAAGACCTATGTGTACAAGTATGAGGCTTTGCTCTTGGGTGGTCTTCCTCAAGAAGGTCTCGCCAGAGCAGGTATCAAAGTCAGCAGCAAGGTTCGTCTGAGTGCCATGACAGAGAACACCTACCTGATGAAGCTTATGGATCCTCTACTCTACGAGTATGCTGGCACTTGGCCCAAGGATTCATTTGTTCCTGCCACTAAGCTCACCTCAGCACTGGCTGCTCAGCTTCAGATTCCTATCAAGTTTGAGTATGCTAATGGTGTGGTTGGCAAGGTTTTCGCCCCAGCAGGAGTCTCTCCTACTGTCATGAACTTGCACAGAGGTATCCTCAACATCCTTCAGCTCAACCTCAAGAAGACGCAGAACATCTACGAGCTGCAAGAGGCTGGAGCTCAGGGAGTGTGCAGGACACACTATGTCATCAATGAAGATCCAAAAACCAACCACATTATTGTCACCAAGTCTAAGGATCTGAGCCACTGCCAGGAGAGAATCATGAAAGATGTTGGCTTGGCATACACTGAGAGGTGTGCTGAATGCACAAAGAGGGTCAAGAGTCTGATTGAAACTGCAACTTATAACTACATCATGAAACCAGCTGACAATGGTGCACTGATCGCTGAGGCAACAGTTGAGGAAGTGTATCAGTTCTCACCCTTCAATGAGATCCATGGTGCTGCAATGATGGAAGCAAAacaaacCTTGGCTTTTGTGGAGATTGAGAAGACCCCTGTTGTTCCAATCAAAGCTGATTACATGCCCCGTGGATCCCTGCAGTACGAGTTTGCATCTGAGATTCTTCAGACCCCCATTCAACTCATGAAGATCAAAGATGCACCAGCCCAGATTGTCGAGGTCCTGAAGCACTTGGTAGAAAACAATAAAGACATGGTCCATGATGATGCTCCATTCAAGTTTGTACAACTTGTTCAGCTCCTGCGTGTTGTCACCTTGGACAAAATTGAGGCTATCTGGTCTCAGTTCAAGGACAAACCAGTTTACAGGCGCTGGCTTCTGGATGCTCTTCCTGCTGTTGGAACACCAGTCATTATAAAATTTATCAAGGAGAAGTTCCTGGCTGGTGAATTTACAACTCCTGAGTTCATTCAGACTCTTGTGATTGCTCTGCAAATGGTCACTGCTGATCTTGAAACCATCCAAATGACAGCTAGTTTGGCTATGCATGAGAAATTTGTCTCAATCCCAGCTTTGCGTGAAGTTGTCATGCTTGGATATGGTTCCTTGATTGCCAAGCACTGTGTTGCAGTTCCCACTTGCCCTGCTGAGCTCCTCAGGCCCATTCATGAGACTGCCACAGAGGCCATTTCTAAGAATGACATTCCTGAAATCACTTTGGCTCTGAAAGTTATGGGCAATGCTGGTCACCCTTCAAGTCTTAAACCCATCATGAAGCTCCTACCTGGACTGAGAACTGCAGCTAATGCTCTGCCCGTTAGAGTCCAGGTTGATGCCATCTTGGCCCTGAGGAACATTGCCAAGAAAGAACCCAAACTGGTTCAGCCTGTTGCCCTGCAGCTTGTTTTGGACAGGGCTCTCCACCCAGAGGTGCGCATGGTTGCTTGTATTGTGCTGTTTGAGACTGAGCCTTCAGTGGCTCTCATCTCCAGTCTTGCTGGAGCTTTGAGGACTGAGCCAAACATGCATGTTGCAAGCTTTGCCTATTCCCACATCAAGTCCTTGACCAGAATCACTGCTCCTGATATGGCATATgtTGCTGGTGCAGCTAATGTTGCCATCAAGCTTATGAACTGCAAGCTGGACAGACTTAACTACCGTTATAGCAGAGCTTTTCAGATGGACTATTATTATACTCCTCTTATGATTGGAGCTGCTGGTAGTGCCTATATGATCAATGATGCTGCCACCATCCTGCCCAGAGCTGTTGTAGCTAAAGCACGTACTTACCTGGCTGGAGCCGCTGCTGATGTTGTtgagTTTGGTGTGAGAACTGGAGGAATCAATGAGGCTCTTCTAAAATCTCCTGCTGCAGATGAAAGTGTTGACCGTATCACAAAGATTAAGCGTACACTGAAAGCACTCACAAACTGGAAGGCTTTGCCAACTGATAAACCACTTGCTTCAGCCTATGTTAAAGTATTTGGACAAGAAGTGGCTTATGTCAACTTTGACAAGACCATCATTGAAGAAGCCATACCGATGGTTACTGGACCCAAACCACGTGCACTGCTGAAGGAGGCTCTTAAAGCTTTGCAGGAAGGAGTTGCCTTCCAGTATGCCAAACCTTTGCTCGCAGCTGAAGTGCGTCGTATCTTGCCAACTGCAGTTGGTGTGCCCATGGAGTTCAGTTGGTAcactgctgctgttgctgctgcaTCTGTCAATGTTCAGGCCACCATTACACCTGCTCTCCCTGAGAAATTGGAGTCCATGACTTATGAGCAACTTAAGAAGACTGATGTTCAGTTCCAAGCTGAAGCTAGACCAAGTGTTGCTCTCCAGACATTTGCTGTGATGGGAGTTAACACTGCCTTCATCCAAGCTGCTGTTATGGCGAGAGGAAAGATCCGTACAATTGCCCCTGGAAAAGTGGCAGCAAGAGCAGACATTCTCAAGGGCAACTACAAGGTGGAGGCTCTGCCTGTTGATCTTCCTGAACACATTGCTTCTGCAAGCTTTGAGACACACGCTGTGGTCAGAAATATTGAAGATCATAGTGCTGAAAGGTCTGTTCCATTGGTACCTCAATTATCACTGCAAAACTCCCAAACATCAAATGCTAATGATTGGtCCTCTGAGATGTCACCTGATGTTTCAGTGAAAGCTCCTGCTCCATTTGACAGGACCCTCTGTTATGCTGTCCCATACATTGAAATTAAGGGATGTGTTGAGGTGCACTCTCACAATGCTGCTTTTATCAGAAATTCTACGCTGTTCTACATAATTGGACAGCACTCAGCCCATGTTGCAGTGGCAAGAGCTGAAGGTCCTGCAGTTGAAAGGCTGGAGTTTGAAGTTCAAGTTGGTCCTAGAGCTGCTGAGAGGCTTGTTAAACAAATCAACATCATTGATGACGATACTCCTGAAGGACAGGCTTTCTTGTTGAAACTGAGGGAAATCCTGGACACTGAAGCTAAAAATGCACCCGTCTcttctgaaagcagcagcagtagCCGCAACAGCCGCAGCATCAGCAGCTCAAGCTCAaactcaaattcaaattcaagcTCAAGCTCAAGTTCAAGCTCAAGTTCAAGTTCAAGCTCAAGCTCCTCCATGTCCAGCTCTCGTATGtctaagACTGCCACCATCATGGAGCCTTTCAGGAAATTTCACAAAGACCGGtacTTGGCAGCACATAGTGCCACAAAGGATACTAGCAGCGGAAGTGCTGCAGCTAGCTTTGAACAAATGCAGAAAAAGAATAGATTCCTTGGAAATGATATTCCACCTGTTTTTGCTATCATCGCCCGTGCTGTTAGAGCTGACCAGAAGCTTCTGGGCTACCAACTGGCTGCTTACTTTGACAAACCAACTGCAAGAGTGCAACTCATAGCTTCCTCCATTGCTGAAAATGACAACATGAAGATCTGTGCTGATGGTGCTCTGCTGAGCAAGCACAAAGTCACTGCCAAGTTTTCTTGGGGTGCGGAGTGCAAACAGTATGCAGTCTTTGCTAAAGCTGAAGCTGGTGTCCTGGGTGAATACCCTGCTGCACGTCTAGAGGTGGAATGGGAGAGACTGCCAAAAATTGTCACCACCTATGCTAAAAAGCTTTCTAAATGCATACTTAATGCAGCTTATGACACAGGATTCAGGTTTGAAAAAGCAACAAACAGCGAGAAAGAGATTGAACTGACTGCAGCCTTGCCATCTCAGAGGTCCTTGAATGTCATTGCTAGGATTCCAGAGATCACAATGTCAAAAAGGGATATTTACCTCCCCGTCACTGTTCCCATCAATCCAGATGGAACTTTTTCCATTAATGAGGACTTTCTTTCCTGGATTCACAAGTATATTAAGGAGGATTGAGGAATGAATTGCAATCTCCATTTTCAAAAGAAAATAGGAGCTGTGTTAATGCATAACTGTCAGTTTAATcaatattattttgtaatgtgATGCTAATAAATACCCTGCAAGTGTAAGAA
>TCONS_00041576
CCACAAAGGATACTAGCAGCGGAAGTGCTGCAGCTAGCTTTGAACAAATGCAGAAAAAGAATAGATTCCTTGGAAATGATATTCCACCTGTTTTTGCTATCATCGCCCGTGCTGTTAGAGCTGACCAGAAGCTTCTGGGCTACCAACTGGCTGCTTACTTTGACAAACCAACTGCAAGAGTGCAACTCATAGCTTCCTCCATTGCTGAAAATGACAACATGAAGATCTGTGCTGATGGTGCTCTGCTGAGCAAGCACAAAGTCACTGCCAAGTTTTCTTGGGGTGCGGAGTGCAAACAGTATGCAGTCTTTGCTAAAGCTGAAGCTGGTGTCCTGGGTGAATACCCTGCTGCACGTCTAGAGGTGGAATGGGAGAGACTGCCAAAAATTGTCACCACCTATGCTAAAAAGTAATGATTTTTAGCACTGAACAACAAATATATAGTGTAGAAAATGTCACTGGTTTAATTATCTGCATTTCTATTTGTTTGCCTCCCAATTAGGCTTTCTAAATGCATACTTAATGCAGCTTATGACACAGGATTCAGGTTTGAAAAAGCAACAAACAGCGAGAAAGAGATTGAACTGACTGCAGCCTTGCCATCTCAGAGGTCCTTGAATGTCATTGCTAGGATTCCAGAGATCACAATGTCAAAAAGGGATATTTACCTCCCCGTCACTGTTCCCATCAATCCAGATGGAACTTTTTCCATTAATGAGGACTTTCTTTCCTGGATTCACAAGTATATTAAGGAGGATTGAGGAATGAATTGCAATCTCCATTTTCAAAAGAAAATAGGAGCTGTGTTAATGCATAACTGTCAGTTTAATcaatattattttgtaatgtgATGCTAATAAATACCCTGCAAGTGTA
>TCONS_00042414
ttttttttttttggcagtacTTGGCAGCACATAGTGCCACAAAGGATACTAGCAGCGGAAGTGCTGCAGCTAGCTTTGAACAAATGCAGAAAAAGAATAGATTCCTTGGAAATGATATTCCACCTGTTTTTGCTATCATCGCCCGTGCTGTTAGAGCTGACCAGAAGCTTCTGGGCTACCAACTGGCTGCTTACTTTGACAAACCAACTGCAAGAGTGCAACTCATAGCTTCCTCCATTGCTGAAAATGACAACATGAAGATCTGTGCTGATGGTGCTCTGCTGAGCAAGCACAAAGTCACTGCCAAGTTTTCTTGGGGTGCGGAGTGCAAACAGTATGCAGTCTTTGCTAAAGCTGAAGCTGGTGTCCTGGGTGAATACCCTGCTGCACGTCTAGAGGTGGAATGGGAGAGACTGCCAAAAATTGTCACCACCTATGCTAAAAAGCTTTCTAAATGCATACTTAATGCAGCTTATGACACAGGATTCAGGTTTGAAAAAGCAACAAACAGCGAGAAAGAGATTGAACTGACTGCAGCCTTGCCATCTCAGAGGTCCTTGAATGTCATTGCTAGGATTCCAGAGATCACAATGTCAAAAAGGGATATTTACCTCCCCGTCACTGTTCCCATCAATCCAGATGGAACTTTTTCCATTAATGAGGACTTTCTTTCCTGGATTCACAAGTATATTAAGGAGGATTGAGGAATGAATTGCAATCTCCATTTTCAAAAGAAAATAGGAGCTGTGTTAATGCATAACTGTCAGTTTAATcaatattattttgtaatgtgATGCTAATAAATACCCTGCAAGTGTA
>TCONS_00041577
ttttttttttttggcagtacTTGGCAGCACATAGTGCCACAAAGGATACTAGCAGCGGAAGTGCTGCAGCTAGCTTTGAACAAATGCAGAAAAAGAATAGATTCCTTGGAAATGATATTCCACCTGTTTTTGCTATCATCGCCCGTGCTGTTAGAGCTGACCAGAAGCTTCTGGGCTACCAACTGGCTGCTTACTTTGACAAACCAACTGCAAGAGTGCAACTCATAGCTTCCTCCATTGCTGAAAATGACAACATGAAGATCTGTGCTGATGGTGCTCTGCTGAGCAAGCACAAAGTCACTGTAAGACTGGAACATTTGGCAAAATGTATTTCTCTACTTCAGTACCATTCTTTAAACTCAAATGTCTTTTTAGGCCAAGTTTTCTTGGGGTGCGGAGTGCAAACAGTATGCAGTCTTTGCTAAAGCTGAAGCTGGTGTCCTGGGTGAATACCCTGCTGCACGTCTAGAGGTGGAATGGGAGAGACTGCCAAAAATTGTCACCACCTATGCTAAAAAGTAATGATTTTTAGCACTGAACAACAAATATATAGTGTAGAAAATGTCACTGGTTTAATTATCTGCATTTCTATTTGTTTGCCTCCCAATTAGGCTTTCTAAATGCATACTTAATGCAGCTTATGACACAGGATTCAGGTTTGAAAAAGCAACAAACAGCGAGAAAGAGATTGAACTGACTGCAGCCTTGCCATCTCAGAGGTCCTTGAATGTCATTGCTAGGATTCCAGAGATCACAATGTCAAAAAGGGATATTTACCTCCCCGTCACTGTTCCCATCAATCCAGATGGAACTTTTTCCATTAATGAGGACTTTCTTTCCTGGATTCACAAGTATATTAAGGAGGATTGAGGAATGAATTGCAATCTCCATTTTCAAAAGAAAATAGGAGCTGTGTTAATGCATAACTGTCAGTTTAATcaatattattttgtaatgtgATGCTAATAAATACCCTGCA
>TCONS_00041578
ttttttttttttggcagtacTTGGCAGCACATAGTGCCACAAAGGATACTAGCAGCGGAAGTGCTGCAGCTAGCTTTGAACAAATGCAGAAAAAGAATAGATTCCTTGGAAATGATATTCCACCTGTTTTTGCTATCATCGCCCGTGCTGTTAGAGCTGACCAGAAGCTTCTGGGCTACCAACTGGCTGCTTACTTTGACAAACCAACTGCAAGAGTGCAACTCATAGCTTCCTCCATTGCTGAAAATGACAACATGAAGATCTGTGCTGATGGTGCTCTGCTGAGCAAGCACAAAGTCACTGTAAGACTGGAACATTTGGCAAAATGTATTTCTCTACTTCAGTACCATTCTTTAAACTCAAATGTCTTTTTAGGCCAAGTTTTCTTGGGGTGCGGAGTGCAAACAGTATGCAGTCTTTGCTAAAGCTGAAGCTGGTGTCCTGGGTGAATACCCTGCTGCACGTCTAGAGGTGGAATGGGAGAGACTGCCAAAAATTGTCACCACCTATGCTAAAAAGCTTTCTAAATGCATACTTAATGCAGCTTATGACACAGGATTCAGGTTTGAAAAAGCAACAAACAGCGAGAAAGAGATTGAACTGACTGCAGCCTTGCCATCTCAGAGGTCCTTGAATGTCATTGCTAGGATTCCAGAGATCACAATGTCAAAAAGGGATATTTACCTCCCCGTCACTGTTCCCATCAATCCAGATGGAACTTTTTCCATTAATGAGGACTTTCTTTCCTGGATTCACAAGTATATTAAGGAGGATTGAGGAATGAATTGCAATCTCCATTTTCAAAAGAAAATAGGAGC

Function

symbol description
vtg6 Predicted to enable lipid transporter activity. Predicted to be involved in cellular response to estrogen stimulus and response to estradiol. Predicted to act upstream of or within lipid transport. Is expressed in intestine; liver; ovary; and unfertilized egg.

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0006869 lipid transport biological_process
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001201-5 Predicted to enable lipid transporter activity. Predicted to be involved in cellular response to estrogen stimulus and response to estradiol. Predicted to act upstream of or within lipid transport. Is expressed in intestine; liver; ovary; and unfertilized egg.

Ensembl:

ensembl_id ENSDARG00000016825

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041575 False 4225 mRNA 0.46 28 24811396 24818066
TCONS_00041576 False 876 processed_transcript 0.41 4 24811400 24812524
TCONS_00042414 False 819 lncRNA 0.42 5 24811400 24812560
TCONS_00041577 False 979 processed_transcript 0.40 3 24811406 24812560
TCONS_00041578 True 818 processed_transcript 0.42 4 24811474 24812560

Neighbor

gene id symbol gene type direction distance location
XLOC_021173 BX539332.1 coding downstream 7109 24798458 ~ 24804287 (-)
XLOC_021172 vtg4 coding downstream 19891 24784013 ~ 24791505 (-)
XLOC_021171 vtg5 coding downstream 53611 24751101 ~ 24757785 (-)
XLOC_021170 vtg1 coding downstream 73208 24730965 ~ 24738188 (-)
XLOC_021169 dre-mir-725 coding downstream 445124 24366193 ~ 24366272 (-)
XLOC_021175 vtg7 coding upstream 33161 24851227 ~ 24858050 (-)
XLOC_021176 vtg2 coding upstream 51624 24869690 ~ 24880824 (-)
XLOC_021177 si:dkey-4c23.3 coding upstream 70583 24888649 ~ 24946883 (-)
XLOC_021178 fam20cl coding upstream 136037 24954103 ~ 24967475 (-)
XLOC_021179 dnal4b coding upstream 155799 24973865 ~ 24984776 (-)
XLOC_021163 BX649608.1 non-coding downstream 560401 24250187 ~ 24250995 (-)
XLOC_021161 NA non-coding downstream 615738 24189138 ~ 24195658 (-)
XLOC_021160 NA non-coding downstream 735111 24074089 ~ 24076285 (-)
XLOC_021181 AL929032.1 non-coding upstream 189875 25007941 ~ 25008757 (-)
XLOC_021184 BX294165.1 non-coding upstream 227626 25045692 ~ 25049205 (-)
XLOC_021186 NA non-coding upstream 315984 25134050 ~ 25135235 (-)
XLOC_021187 NA non-coding upstream 523677 25341743 ~ 25344648 (-)
XLOC_021188 NA non-coding upstream 542052 25360118 ~ 25360570 (-)

Expression


Co-expression Network