XLOC_021187


Basic Information

Item Value
gene id XLOC_021187
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 25341743 ~ 25344648 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042416
GGAAGAAGCTGTTGTGGTTTAAAATTTGTAGCGCAGAGTTGGATTGCGAGTTCAAGTGGCCTACAAGaTATTTGAGTGTGTCCATGTAAAATGAGCAGTCTAGCAGGTGTTTTTTGTTCTAGTTTTAATATGTAACCATCAAGCGTGATTGTGTCATGAACACCTACCTCATTTGAAGAGTGTGTACATCTACCTCAATGAAGACTTGTAAAAGAATATGTGGACTGAAAGTGCAGTGGCTGAATCTCAAAATGCACACACAGCAGTGGAGATCTTTATTGTTAGGGCGGAGGATGCTGGTCCTGGGGACAGCCCTACAAATGCTGGTGTAGAAGTTCTGCAGAGTGTCACAATTGGATTGGATGGACTTTTTGGGTTCATGTACACTTAGgggtttttttttaaccagaaaTGAAAACGTTTAATTATTTATGCTGTACCAAACATTGATTTGTCTTCATAGTACAAATTAAGATACTTCAGgcgaaatctgagagctctctcattctctatagacagcaatggtcccaacTTGTTTAAAGTCCAGAGAAATGTctaaaacatcctcaaaacagaccacaTGCTTTCAGTTGTTCAATCAGAATATTTTTAAGCTACAATAATAATTCTGAGCatataaagcaaaaataacagcctttgactttcttcaaaatatcttctgtttaaCAGGAAAAAAATCTTAGTTTTTATCGTATTTGTTTTGTCATAACTttgacatttatatataaatatatatatttttttattttgtattggttaatgttgcttttattaataaaagcttTGTTAAATTAGTTTGAATGGATTGTATTTTTGAGAACCTGtt
>TCONS_00041963
GGAAGAAGCTGTTGTGGTTTAAAATTTGTAGCGCAGAGTTGGATTGCGAGTTCAAGTGGCCTACAAGaTATTTGAGTGTGTCCATGTAAAATGAGCAGTCTAGCAGTTTTAATATGTAACCATCAAGCGTGATTGTGTCATGAACACCTACCTCATTTGAAGAGTGTGTACATCTACCTCAATGAAGACTTGTAAAAGAATATGTGGACTGAAAGTGCAGTGGCTGAATCTCAAAATGCACACACAGCAGTGGAGATCTTTATTGTTAGGGCGGAGGATGCTGGTCCTGGGGACAGCCCTACAAATGCTGGTGTAGAAGTTCTGCAGAGTGTCACAATTGGATTGGATGGACTTTTTGGGTTCATGTACACTTAGgggtttttttttaaccagaaaTGAAAACGTTTAATTATTTATGCTGTACCAAACATTGATTTGTCTTCATAGTACAAATTAAGATACTTCAGgcgaaatctgagagctctctcattctctatagacagcaatggtcccaacTTGTTTAAAGTCCAGAGAAATGTctaaaacatcctcaaaacagaccacaTGCTTTCAGTTGTTCAATCAGAATATTTTTAAGCTACAATAATAATTCTGAGCatataaagcaaaaataacagcctttgagtttcttctgttaaacaagatattttgaagaaagctgaatacctgtaaccatttactttcatagtatttatttacttgttttcagctttcttcaaaatatcttctgtttaaCAGGAAAAAAATCTTAGTTTTTATCGTATTTGTTTTGTCATAACTttgacatttatatataaatatatatatttttttattttgtattggttaatgttgcttttattaataaaagcttTGTTAAATTAGTTTGAATGGATTGTATTTTTGAGAACCTGtt
>TCONS_00041964
GGAAGAAGCTGTTGTGGTTTAAAATTTGTAGCGCAGAGTTGGATTGCGAGTTCAAGTGGCCTACAAGaTATTTGAGTGTGTCCATGTAAAATGAGCAGTCTAGCAGGTGTTTTTTGTTCTAGTTTTAATATGTAACCATCAAGCGTGATTGTGTCATGAACACCTACCTCATTTGAAGAGTGTGTACATCTACCTCAATGAAGACTTGTAAAAGAATATGTGGACTGAAAGTGCAGTGGCTGAATCTCAAAATGCACACACAGCAGTGGAGATCTTTATTGTTAGGGCGGAGGATGCTGGTCCTGGGGACAGCCCTACAAATGCTGGTGTAGAAGTTCTGCAGAGTGTCACAATTGGATTGGATGGACTTTTTGGGTTCATGTACACTTAGgggtttttttttaaccagaaaTGAAAACGTTTAATTATTTATGCTGTACCAAACATTGATTTGTCTTCATAGTACAAATTAAGATACTTCAGgcgaaatctgagagctctctcattctctatagacagcaatggtcccaacTTGTTTAAAGTCCAGAGAAATGTctaaaacatcctcaaaacagaccacaTGCTTTCAGTTGTTCAATCAGAATATTTTTAAGCTACAATAATAATTCTGAGCatataaagcaaaaataacagcctttgagtttcttctgttaaacaagatattttgaagaaagctgaatacctgtaaccatttactttcatagta
>TCONS_00041603
GAAACGGACCAACAAATCAAGAGGAAGAAGCTGTTGTGGTTTAAAATTTGTAGCGCAGAGTTGGATTGCGAGTTCAAGTGGCCTACAAGaTATTTGAGTGTGTCCATGTAAAATGAGCAGTCTAGCAGTTTTAATATGTAACCATCAAGCGTGATTGTGTCATGAACACCTACCTCATTTGAAGAGTGTGTACATCTACCTCAATGAAGACTTGTAAAAGAATATGTGGACTGAAAGTGCATTGGCTGAATCTCAAAATGCACACACAGCAGTGGAGATCTTTATTGTTTGGTCTGAGGATGCTGGTCctggggatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagcttttattaataaaagcttTGTTAAATTA
>TCONS_00042417
CGCAGAGTTGGATTGCGAGTTCAAGTGGCCTACAAGaTATTTGAGTGTGTCCATGTAAAATGAGCAGTCTAGCAGGTATGAGTTGCCTAAACACTTTAGACTAATACATTTACACTATGACCACATTTGCTGGTTTCGCTGTCCAAATGCAGATTGCCCATGTGCATTCACAAGCTGGATGAAGCGTTCGAGTCACATCAAACACAcagaataaatattaaacaatatatatgcATTATCCATATAACTGCGGTTGACATAAAGAAACATTGAATATAACACATTGATgctaaaatagttaaaataagtgaataaataatttaatttaaatgtgtaaataagtaatctgctttaagctgtaaacctgtggctaattatttttatgttgatAGGTGTTTTTTGTTCTAGTTTTAATATGTAACCATCAAGCGTGATTGTGTCATGAACACCTACCTCATTTGAAGAGTGTGTACATCTACCTCAATGAAGACTTGTAAAAGAATATGTGGACTGAAAGTGCATTGGCTGAATCTCAAAATGCACACACAGCAGTGGAGATCTTTATTGTTTGGTCTGAGGATGCTGGTCctggggata
>TCONS_00041965
GGAAGAAGCTGTTGTGGTTTAAAATTTGTAGCGCAGAGTTGGATTGCGAGTTCAAGTGGCCTACAAGaTATTTGAGTGTGTCCATGTAAAATGAGCAGTCTAGCAGGTGTTTTTTGTTCTAGTTTTAATATGTAACCATCAAGCGTGATTGTGTCATGAACACCTACCTCATTTGAAGAGTGTGTACATCTACCTCAATGAAGACTTGTAAAAGAATATGTGGACTGAAAGTGCATTGGCTGAATCTCAAAATGCACACACAGCAGTGGAGATCTTTATTGTTTGGTCTGAGGATGCTGGTCctggggata
>TCONS_00042418
ATCAAGAGGAAGAAGCTGTTGTGGTTTAAAATTTGTAGCGCAGAGTTGGATTGCGAGTTCAAGTGGCCTACAAGGTAATGTAATCTGCTTTAATATCATTTTATTTGGCAATGTTTTTAATCATATGTGCAAGGTTTAATATAGTATTACGCTAATATCAATGCACAGGCACCCTTTATTCCAAAAATCTTAgacaaacataaaaacagtgtGAGGGAGTGTTATAATCTTTTAAACAcgcaaaattaaacatttattaagcaAAGTTCGGTGAttaagtgcatttattgtgtacatTACGAGTCATCTGAATTAAATTGCCCCATGAAGTCAATTAAAAAGTCAGTCATGAAATGAGACTTCTGCAGTTTTAGCTTTTAAATCATGTTTGTTTCTGATTTCATAACAAGAGACTTTTAGAAACAAACAAGCACCAAGTTAATTCTGTTTTTAGAGAATCAATTCAAGttaatttctgttttttatattataaataaactttactatgttatggaaaatgtattttttttgtaaaatgagtAACTGTTTTTTGACTTGTCACAGTAAAATCTAGTATAAAATAAGCTGATAGTagttgttattagtattattattataatgcttCTCTAATATTtgtaacttattttttttctccacagaTATTTGAGTGTGTCCATGTAAAATGAGCAGTCTAGCAGGTATGAGTTGCCTAAACACTTTAGACTAATACATTTACACTATGACCACATTTGCTGGTTTCGCTGTCCAAATGCAGATTGCCCATGTGCATTCACAAGCTGGATGAAGCGTTCGAGTCACATCAAACACAcagaataaatattaaacaatatatatgcATTATCCATATAACTGCGGTTGACATAAAGAAACATTGAATATAACACATTGATgctaaaatagttaaaataagtgaataaataatttaatttaaatgtgtaaataagtaatctgctttaagctgtaaacctgtggctaattatttttatgttgatAGGTGTTTTTTGTTCTAGTTTTAATATGTAACCATCAAGCGTGATTGTGTCATGAACACCTACCTCATTTGAAGAGTGTGTACATCTACCTCAATGAAGACTTGTAAAAGAATATGTGGTAAGTGTGTCAACCCATCTTCcttttataaacatatttgtaaaacTCACAGGACTGTTACAGGACTGAGTTTAGAACACATCTCagtatttttttccctttttctccAGGACTGAAAGTGCATTGGCTGAATCTCAAAATGCACACACAGCAGTGGAGATCTTTATTGTTTGGTCTGAGGATGCTGGTCctggggata

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000104728

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042416 False 847 lncRNA 0.34 5 25341743 25344626
TCONS_00041963 False 916 lncRNA 0.34 4 25341743 25344626
TCONS_00041964 False 727 lncRNA 0.37 4 25341948 25344626
TCONS_00041603 False 421 lncRNA 0.32 4 25343200 25344648
TCONS_00042417 False 597 lncRNA 0.36 3 25343304 25344595
TCONS_00041965 False 311 lncRNA 0.41 4 25343304 25344626
TCONS_00042418 True 1330 lncRNA 0.32 1 25343304 25344633

Neighbor

gene id symbol gene type direction distance location
XLOC_021186 NA coding downstream 206508 25134050 ~ 25135235 (-)
XLOC_021185 kat14 coding downstream 263025 25066110 ~ 25078718 (-)
XLOC_021184 BX294165.1 coding downstream 292538 25045692 ~ 25049205 (-)
XLOC_021183 polr3f coding downstream 298640 25034740 ~ 25043103 (-)
XLOC_021182 nptxrb coding downstream 308638 25025136 ~ 25033105 (-)
XLOC_021188 NA coding upstream 15470 25360118 ~ 25360570 (-)
XLOC_021189 NA coding upstream 56094 25400742 ~ 25402438 (-)
XLOC_021190 si:ch73-189n23.1 coding upstream 71332 25415980 ~ 25417132 (-)
XLOC_021191 CR769772.3 coding upstream 88201 25432849 ~ 25435548 (-)
XLOC_021192 CR769772.4 coding upstream 120232 25464880 ~ 25502977 (-)
XLOC_021181 AL929032.1 non-coding downstream 332986 25007941 ~ 25008757 (-)
XLOC_021173 BX539332.1 non-coding downstream 537456 24798458 ~ 24804287 (-)
XLOC_021169 dre-mir-725 non-coding downstream 975471 24366193 ~ 24366272 (-)
XLOC_021193 CR769772.1 non-coding upstream 128652 25473300 ~ 25546076 (-)
XLOC_021194 NA non-coding upstream 153486 25498134 ~ 25533990 (-)

Expression


Co-expression Network