XLOC_021189


Basic Information

Item Value
gene id XLOC_021189
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 25400742 ~ 25402438 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041967
gaaacattatataaTCGTAGAATACAGATAAAATTAAATGCATCTATTTAACTGCGAGTGAAAAAAATACTAGCTCCGCCTCCCGGAATGACGTCATCTGCGCGCGTTGAgttgagagagagaggcagagtcACAGCGTGAGAGAGGAGTGAAACGAGAGAAACGTGAACAGCTGAAGCGAGCTCGCGGCCCGCGTCGTGTATAGCTGTAAAATTTGAGAAATTAGAAGTAAAACAAGCAGTTGAAACTTGATTTAGTTGCAGTAATATACTACTGTCCGTACTCAAACCCCCAATCGCGTTTGGACCAAGGACAGGAATCGTCTGAAGCACAGATCTGATtaggctgtattttttttttggttcataaGTGATTTTTTCTTCAACTATAACTACTATATTTCTTGGTTggggtttttttttgtgtgttcttttcctctgtttttgtttttccatctTCTCTGTTCGTGATCCTGACACCTGACATTTGGAGTGTGGAGTTCTAGAAGTCCAAAGTATTCTTGTTTCTGCCATCTTGGAGGACATTCGCTGTTGGTGGAAACTGGCGAGCCGCCCGGTTTTATGGAACCAATATTTTGTGTTGCccaattcatctgattggtaggaaatttgagtttatattttCCATCGTCTATCGGACACAGGAACGACTGGAAGCCAGAGTCATATTTACTTCTATTTTTCTGGAACTGAGCTACTAATcagtgttaaaacaaaacactgcaacgggtgcattataaacatttgagtttattgAACTGAACTTGAACATTTCACAACCAAACAGGTGATCAATCATATTTGTTTGATGGACTAGTGAATCATTTTGCCGAATCACTTTGGTATCTGACAAGAAATTATTTTCTGGGTTCAATTTTCTAGCCGTTTTTTTCCTAATTGAAGTGTTCCAATTATTACTATGGTCTTACTTACCTAAGGAGTGCTGAAGTTGTTTGTATTTaccttttacattttgtttttgtgaagaaAACACTTGACATAGTgtgaaaagcctttattttattttattactttatatttggGGAAATATACATTTCAAAGTCCAAATTTGAGAAtaattagtttgttattttatttaatttatttcatttctcactaatatttacaatataaatcatatatattttgatacaaaaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041967 True 1178 lncRNA 0.36 2 25400742 25402438

Neighbor

gene id symbol gene type direction distance location
XLOC_021188 NA coding downstream 40172 25360118 ~ 25360570 (-)
XLOC_021187 NA coding downstream 56094 25341743 ~ 25344648 (-)
XLOC_021186 NA coding downstream 265507 25134050 ~ 25135235 (-)
XLOC_021185 kat14 coding downstream 322024 25066110 ~ 25078718 (-)
XLOC_021184 BX294165.1 coding downstream 351537 25045692 ~ 25049205 (-)
XLOC_021190 si:ch73-189n23.1 coding upstream 13542 25415980 ~ 25417132 (-)
XLOC_021191 CR769772.3 coding upstream 30411 25432849 ~ 25435548 (-)
XLOC_021192 CR769772.4 coding upstream 62442 25464880 ~ 25502977 (-)
XLOC_021193 CR769772.1 coding upstream 70862 25473300 ~ 25546076 (-)
XLOC_021194 NA coding upstream 95696 25498134 ~ 25533990 (-)
XLOC_021181 AL929032.1 non-coding downstream 391985 25007941 ~ 25008757 (-)
XLOC_021195 NA non-coding upstream 103118 25505556 ~ 25506143 (-)
XLOC_021196 CR769772.2 non-coding upstream 138507 25540945 ~ 25543199 (-)

Expression


Co-expression Network