XLOC_021193 (CR769772.1)


Basic Information

Item Value
gene id XLOC_021193
gene name CR769772.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 25473300 ~ 25546076 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041610
TTGCAGGGTGTTTCTGATGGAGTCAAACCATATGCTCCGCGGAAACGCATCAGAGCTGCAGAGACGTCCAGCGATGAGAACAGCAGCTCAGGAGGAAGAGGAGAGAAGCGGAAAGCAGATGATGCTTTTCAGAGTGTTTCTGGTGGAGGCAAACCATCTGCCCACCAGAAACGCATCAAAGTTGCAGAGCTGGAGAACACAAGTGTAGACGCCGACACAGAGGCGTCCAGCTCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGGTTTGCAGAGTGATTCTGATGGAGTCAAACCATACGCTCTGCGGAAACGCATCAAAGCTGCAGAGACGTCCAGCGATGAGAACAGCAGCTCAGAAGCTCCAAGAGCACAGAAGAGGAAGGCTAGATGTCTGGATCAGAACACAGCTGCTGCAAAACGAGTGAAAACAGCACAGATCCAACATGGCGGCAGCAGCA
>TCONS_00041969
GATCAGGTTTATAATATACAGATCTTAGAAACTTGTGTATTAAAGATAATACGCGCTGCTTTATAGGGTAAAGGTCACAGACCCTCAGGAAAGACGACTCGTTGCTTAGCAACAGCAGAACGCGTTCTAACGGTTGTAGAGAGTCTGCAGACAAGCACAAACTCAGCTTCAGTAATCTGCTGGAACCAGAAATGAAGGTTGATTGTGAAAGTTGCTCTTGGTCGATAAACACATCGAGCAAAACAGTTGAACGATTTCAGACGATGTCTACAAGACCTTTCAAGATTCTAGCGGAAATGGAAAGTTTTAAGACCGTGATGGTTAAAGGTGAAGGAGAGAAGTGGAAAGAGGATGAtgcttttcacagtattttaggTGAAGGTAAACCATATTCTCTACGGATACGCATCAAAGTTGCAGATCGGAAGAACATAAGAGTGGGCGCCGACACAGAGGCGTCCAGCTCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGATTTGCAGG
>TCONS_00041968
GATCAGGTTTATAATATACAGATCTTAGAAACTTGTGTATTAAAGATAATACGCGCTGCTTTATAGGGTAAAGGTCACAGACCCTCAGGAAAGACGACTCGTTGCTTAGCAACAGCAGAACGCGTTCTAACGGTTGTAGAGAGTCTGCAGACAAGCACAAACTCAGCTTCAGTAATCTGCTGGAACCAGAAATGAAGGTTGATTGTGAAAGTTGCTCTTGGTCGATAAACACATCGAGCAAAACAGTTGAACGATTTCAGACGATGTCTACAAGACCTTTCAAGATTCTAGCGGAAATGGAAAGTTTTAAGACCGTGATGGTTAAAGGTGAAGGAGAGAAGTGGAAAGAGGATGAtgcttttcacagtattttaggTGAAGGTAAACCATATTCTCTACGGATACGCATCAAAGTTGCAGATCGGAAGAACATAAGAGTGGGCGCCGACACAGAGGCGTCCAGCTCAGGTCAGTCCACTCTTTATGActggagaaatactggaaaactgGAGCACTGCTGCCATTTGTTACATCCCAGAGTAAAATAAACGGCAATTATTGAAATAActgattattaataattcattattgaCTGTAATCCACATCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGATTTGCAGG
>TCONS_00041971
GATCAGGTTTATAATATACAGATCTTAGAAACTTGTGTATTAAAGATAATACGCGCTGCTTTATAGGGTAAAGGTCACAGACCCTCAGGAAAGACGACTCGTTGCTTAGCAACAGCAGAACGCGTTCTAACGGTTGTAGAGAGTCTGCAGACAAGCACAAACTCAGCTTCAGTAATCTGCTGGAACCAGAAATGAAGGTTGATTGTGAAAGTTGCTCTTGGTCGATAAACACATCGAGCAAAACAGTTGAACGATTTCAGACGATGTCTACAAGACCTTTCAAGATTCTAGCGGAAATGGAAAGTTTTAAGACCGTGATGGTTAAAGGTGAAGGAGAGAAGTGGAAAGAGGATGAtgcttttcacagtattttaggTGAAGGCAAACCATATTCTCTACGGATACGCATCAAAGTTGCAGATCCGAAGAACATAAGAGTGGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092772

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041610 False 463 processed_transcript 0.52 4 25473300 25475031
TCONS_00041969 False 510 lncRNA 0.43 3 25475025 25546076
TCONS_00041968 False 650 lncRNA 0.42 2 25475025 25546076
TCONS_00041971 True 442 lncRNA 0.41 2 25543973 25546076

Neighbor

gene id symbol gene type direction distance location
XLOC_021191 CR769772.3 coding downstream 37752 25432849 ~ 25435548 (-)
XLOC_021190 si:ch73-189n23.1 coding downstream 56168 25415980 ~ 25417132 (-)
XLOC_021189 NA coding downstream 70862 25400742 ~ 25402438 (-)
XLOC_021188 NA coding downstream 112730 25360118 ~ 25360570 (-)
XLOC_021187 NA coding downstream 128652 25341743 ~ 25344648 (-)
XLOC_021197 NA coding upstream 59939 25606015 ~ 25613341 (-)
XLOC_021198 si:ch211-12h2.8 coding upstream 65339 25611415 ~ 25612680 (-)
XLOC_021199 NA coding upstream 189105 25735181 ~ 25743791 (-)
XLOC_021200 AL845363.1 coding upstream 260365 25806441 ~ 25806557 (-)
XLOC_021201 pdgfaa coding upstream 445054 25991130 ~ 26005894 (-)
XLOC_021186 NA non-coding downstream 338065 25134050 ~ 25135235 (-)
XLOC_021210 NA non-coding upstream 813486 26359562 ~ 26369942 (-)
XLOC_021211 NA non-coding upstream 832947 26379023 ~ 26383952 (-)

Expression


Co-expression Network