RNA id: TCONS_00041968


Basic Information

Item Value
RNA id TCONS_00041968
length 650
lncRNA type sense_over
GC content 0.42
exon number 2
gene id XLOC_021193
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 25473300 ~ 25546076 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCAGGTTTATAATATACAGATCTTAGAAACTTGTGTATTAAAGATAATACGCGCTGCTTTATAGGGTAAAGGTCACAGACCCTCAGGAAAGACGACTCGTTGCTTAGCAACAGCAGAACGCGTTCTAACGGTTGTAGAGAGTCTGCAGACAAGCACAAACTCAGCTTCAGTAATCTGCTGGAACCAGAAATGAAGGTTGATTGTGAAAGTTGCTCTTGGTCGATAAACACATCGAGCAAAACAGTTGAACGATTTCAGACGATGTCTACAAGACCTTTCAAGATTCTAGCGGAAATGGAAAGTTTTAAGACCGTGATGGTTAAAGGTGAAGGAGAGAAGTGGAAAGAGGATGAtgcttttcacagtattttaggTGAAGGTAAACCATATTCTCTACGGATACGCATCAAAGTTGCAGATCGGAAGAACATAAGAGTGGGCGCCGACACAGAGGCGTCCAGCTCAGGTCAGTCCACTCTTTATGActggagaaatactggaaaactgGAGCACTGCTGCCATTTGTTACATCCCAGAGTAAAATAAACGGCAATTATTGAAATAActgattattaataattcattattgaCTGTAATCCACATCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGATTTGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041967 lncRNA downstream 72587 25400742 ~ 25402438 (-) True XLOC_021189
TCONS_00041966 lncRNA downstream 114455 25360118 ~ 25360570 (-) True XLOC_021188
TCONS_00042418 lncRNA downstream 130392 25343304 ~ 25344633 (-) True XLOC_021187
TCONS_00041965 lncRNA downstream 130399 25343304 ~ 25344626 (-) False XLOC_021187
TCONS_00042417 lncRNA downstream 130430 25343304 ~ 25344595 (-) False XLOC_021187
TCONS_00042420 lncRNA upstream 59939 25606015 ~ 25613341 (-) True XLOC_021197
TCONS_00042421 lncRNA upstream 189105 25735181 ~ 25743791 (-) True XLOC_021199
TCONS_00041972 lncRNA upstream 813486 26359562 ~ 26369942 (-) True XLOC_021210
TCONS_00041973 lncRNA upstream 832947 26379023 ~ 26383952 (-) True XLOC_021211
TCONS_00041634 lncRNA upstream 1119882 26665958 ~ 26666940 (-) True XLOC_021219
TCONS_00041608 mRNA downstream 5274 25464880 ~ 25469751 (-) False XLOC_021192
TCONS_00041604 mRNA downstream 57893 25415980 ~ 25417132 (-) True XLOC_021190
TCONS_00041602 mRNA downstream 396307 25074074 ~ 25078718 (-) True XLOC_021185
TCONS_00041601 mRNA downstream 396375 25066110 ~ 25078650 (-) False XLOC_021185
TCONS_00041599 mRNA downstream 431922 25034740 ~ 25043103 (-) True XLOC_021183
TCONS_00041612 mRNA upstream 65339 25611415 ~ 25612680 (-) True XLOC_021198
TCONS_00041614 mRNA upstream 445054 25991130 ~ 26005894 (-) True XLOC_021201
TCONS_00041615 mRNA upstream 539267 26085343 ~ 26100282 (-) True XLOC_021202
TCONS_00041616 mRNA upstream 583174 26129250 ~ 26175237 (-) True XLOC_021203
TCONS_00041617 mRNA upstream 634108 26180184 ~ 26236275 (-) False XLOC_021204
TCONS_00041605 other downstream 39477 25432849 ~ 25435548 (-) False XLOC_021191
TCONS_00041607 other downstream 39477 25433780 ~ 25435548 (-) True XLOC_021191
TCONS_00041606 other downstream 39514 25432923 ~ 25435511 (-) False XLOC_021191
TCONS_00041600 other downstream 425820 25045692 ~ 25049205 (-) True XLOC_021184
TCONS_00041597 other downstream 466268 25007941 ~ 25008757 (-) False XLOC_021181
TCONS_00041613 other upstream 260365 25806441 ~ 25806557 (-) True XLOC_021200
TCONS_00041632 other upstream 1098158 26644234 ~ 26644968 (-) True XLOC_021217
TCONS_00041633 other upstream 1103429 26649505 ~ 26650144 (-) True XLOC_021218
TCONS_00041640 other upstream 1519210 27065286 ~ 27086340 (-) False XLOC_021225
TCONS_00041644 other upstream 1571692 27117768 ~ 27118361 (-) True XLOC_021227