RNA id: CI01000030_02824217_02832330.mRNA


Basic Information

Item Value
RNA id CI01000030_02824217_02832330.mRNA
length 1605
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000030_02824217_02832330
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2823974 ~ 2833212 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTCATTTAACCCTTTTTTTTTCTCAATAAAATGGCCGACTTATTTGTTTTTCTAAGAAAGGATTTATGTCTCCTAAAATACACATTTTCATAATTTGACAGAATTACAGCTGGATTGGCTATGACGTACAATAAAAATATTTTGCTAGCACGTGATAATTACCTTATTTTTTCCTTTGTTTTCTTCACACATCCTCTCATATTTGACATTGAGAATACTCTTCATGACACTGTTGTCTGTTTGATGAATAAGTTCACTACCTTTTTGAAAGGGGCAAACTTGGTGGAAATGACGTCACAGCTGAGAATTGTTTTGCGAAAAAAAAATAGATTTTCAAAATTTTACTTTATAAAGTTTGAAAACTAACAAAGCTGTGCGCATTACATTTTATATGTTTCTGTCTTTTCATTTTATTTAATTTTTCTGTTTTGTCTATCTGTATTTGTAAATTTGGTTTTAAGGATTTACAAATAAATTTGGACACAATGAATATTAAAAACGTTTGTGTTTATTTTCCTCCTTGTTCAATATAGATTTAAACGTGTAATAATTAATATTTTTATGATCGATTTAAATATTTTAATGTAAATTTGGGACAAGGCTAAAACAATCAAATCTATGCAAAAACGCAATTTAAACGATGCAAAACACCCCCGATATGAATAAATAATATCCTCTACGTCTCAGTTCACATTCGCTTGAAAAAAAAAACTACAGGTCCCATCAGCCCCACAGTTCTCGCAAGGCCTGACGGGAAAGGTTGCCCGTGCCCTTGTCCTATCAGCCGCGTACTGTCTGACTTGACTGCCTGTGTGGACAGGGAAGCCGAGGCTTGTGCATTGCAGTGTTGTAAAGGTCGGGTCGCTTCTCCGTGGTAAAAATGATGGCAGCAAGGTTTCTCCTTCGTCGCGCGGTCCCTGCGCTGAGACACGTGCGTTGTTATGCCGACGCGCCCGCCACTCAGATGTCCTTCACTTTCGCATCGCCGACACAGGTGTTCTTCAAGGAAGCCAGCGTAAAACAGATTGACGTCCCAACACTGACAGGCGCCTTTGGTATCCTGCCAGCCCACGTCCCCACACTGCAGGTGCTCCGGCCCGGCGTAGTCACCGTCTTCAATGACGATGGTTCCTCTGCTAAGTATTTTGTGAGCAGTGGATCAGTCACTGTCAATGCCGACTCTTCAGTGCAGCTGCTGGCAGAAGAGGCCGTTCCTCTGGACGACCTCGACCTCGCAGCGGCGAAAGCGAACCTCGAGAAAGCCCAGTCAGAACTGATGGGCGCTTCAGATGAGGCAGCCCGGGCAGAGGTTCTGATCAGCATAGAGGCAAACGAGGCAATCGTCAAAGCACTGGAGTAAATGACTCGTGTGTTGGTATGTACACTTTTTAGCAAATGAGGAATGTTGGACGACACTCATTAAATACAATATAATACATGCGGCATATTAATGTACTTATGCTTCGTTATCTTCTATTTTTTGTTTCTCAGTAGGAAATTCTGTCGGTGTGAAAAAGTCTCCAGCTTTGTCTGTTCCCCACCCCAGTGAAGTCAGAAACCGCAAGACTGCTTGCTTTGTACAGTGGATGAAATTAACAATAAA

Function

GO:

id name namespace
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180569 lncRNA downstream 145256 2678489 ~ 2678718 (-) True G159050
TU180565 lncRNA downstream 159788 2663953 ~ 2664186 (-) True G159046
TU180563 lncRNA downstream 160697 2663060 ~ 2663277 (-) True G159044
TU180540 lncRNA downstream 190823 2630629 ~ 2633151 (-) True G159022
TU180547 lncRNA downstream 217317 2605948 ~ 2606657 (-) True G159029
TU180636 lncRNA upstream 27012 2860224 ~ 2860688 (-) True G159103
TU180637 lncRNA upstream 27561 2860773 ~ 2861233 (-) True G159104
TU180638 lncRNA upstream 28096 2861308 ~ 2861696 (-) True G159105
TU180639 lncRNA upstream 32390 2865602 ~ 2866251 (-) True G159106
TU180645 lncRNA upstream 44378 2877590 ~ 2877839 (-) True G159112
CI01000030_02785349_02803666.mRNA mRNA downstream 20308 2783629 ~ 2803666 (-) True CI01000030_02785349_02803666
CI01000030_02690496_02691051.mRNA mRNA downstream 132487 2690496 ~ 2691487 (-) True CI01000030_02690496_02691051
CI01000030_02688886_02690562.mRNA mRNA downstream 133412 2688478 ~ 2690562 (-) True CI01000030_02688886_02690562
CI01000030_02653346_02655442.mRNA mRNA downstream 167659 2653247 ~ 2656315 (-) True CI01000030_02653346_02655442
CI01000030_02585436_02586251.mRNA mRNA downstream 236498 2585418 ~ 2587476 (-) True CI01000030_02585436_02586251
CI01000030_02978356_03013342.mRNA mRNA upstream 144562 2977774 ~ 3013507 (-) True CI01000030_02978356_03013342
CI01000030_03213584_03216600.mRNA mRNA upstream 379899 3213111 ~ 3216600 (-) True CI01000030_03213584_03216600
CI01000030_03273527_03314595.mRNA mRNA upstream 440315 3273527 ~ 3314595 (-) True CI01000030_03273527_03314595
CI01000030_03491770_03493119.mRNA mRNA upstream 656907 3490119 ~ 3493741 (-) False CI01000030_03491770_03493119
CI01000030_03545674_03546876.mRNA mRNA upstream 711930 3545142 ~ 3547053 (-) True CI01000030_03545674_03546876
TU180496 other downstream 291410 2499584 ~ 2532564 (-) False G158980
TU180428 other downstream 372256 2450849 ~ 2451718 (-) True G158914
TU180311 other downstream 664683 2068000 ~ 2159291 (-) True G158802
TU180273 other downstream 901843 1920258 ~ 1922131 (-) True G158780
TU181861 other upstream 528590 3361802 ~ 3478867 (-) False G160207
TU181889 other upstream 633141 3466353 ~ 3469162 (-) False G160213
TU181890 other upstream 633141 3466353 ~ 3469162 (-) True G160213
TU182444 other upstream 2585907 5419119 ~ 5423513 (-) True G160713
TU182441 other upstream 2623748 5456960 ~ 5512074 (-) True G160712

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041428 True 882 mRNA 0.52 4 NC_007133.7 18768251 ~ 18779232 (-)