RNA id: CI01000030_03213584_03216600.mRNA


Basic Information

Item Value
RNA id CI01000030_03213584_03216600.mRNA
length 809
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000030_03213584_03216600
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3213111 ~ 3216600 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTGCCAAGATTTTTCCTGTAGTCAAGTTTGCCACAAAAGTGACCATTGCAGGAGGAGCCCTATATGTTGCATATGATTCAGGACTTCTTGGAGGCAGCGAGCAAGGATCTGTTGCCTTGGGCCGAGCTAAAGCAGCCATCCCACCTGCTGTGGAGGAGTGGATGAAGTACTTTGGCTTTGAGCTTCCTGCCACGCCCAAAATTGAGTTCTCCCCACTGGATGCATGGAACTCAGGGGTCAAGAAGTCTATCCATGCCCTATCAGTTGCTCCTTCCACAGTTAGTGACTATACCAAACAAGGCCTGCAATATGTTAAAGACCATTCAAAATGAGCATTTAGAACTTCAAAAGTAGCATATTGAAAAATTTCAGCGGCTGAGAAGACTTAAACACGTCAAGAAGTGTTTCACCCTCATATACGTCGAACTGAATTCCGTTAAGTTTTGAGGAACAACAATTAGAGTTTGTAAAATTCAAATATGAATATTATAATGGTATAAACCACAATTTACACTTTTTTTTTTTTTTTTTGTGCATGTGCTTTTTGGTTACAGAAATAACAGAAACGTATTAATCTTGGAGTTGTAAAGCTTCAAGATGAATCCTAATTTGAAGATAAAAATATAAGCGTGTTCTATATGTATATTGTTATTCAGCTTTTATTTATTTGAGAAATCTCTTCCTGGAAATGGTCTGTTCTGGCATTCTGGAATCTGAAATTCACCTTTTATATAGACACAAATGGACTGCAACTGAGTTTTGTATAGTTTATAATCCCATGTTGCTCTGACTTATGTAAAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180754 lncRNA downstream 63561 3149336 ~ 3149550 (-) True G159202
TU180747 lncRNA downstream 77309 3135484 ~ 3135802 (-) True G159196
TU180733 lncRNA downstream 97738 3110871 ~ 3115373 (-) True G159183
TU180692 lncRNA downstream 104526 3061441 ~ 3108585 (-) True G159152
TU180663 lncRNA downstream 261766 2944462 ~ 2951345 (-) False G159129
TU180773 lncRNA upstream 3801 3220401 ~ 3220996 (-) True G159218
TU181874 lncRNA upstream 131604 3348204 ~ 3415342 (-) False G160207
TU181887 lncRNA upstream 152756 3369356 ~ 3374235 (-) True G160212
TU181883 lncRNA upstream 157899 3374499 ~ 3399010 (-) True G160210
TU181873 lncRNA upstream 196707 3413307 ~ 3470728 (-) False G160207
CI01000030_02978356_03013342.mRNA mRNA downstream 199604 2977774 ~ 3013507 (-) True CI01000030_02978356_03013342
CI01000030_02824217_02832330.mRNA mRNA downstream 379899 2823974 ~ 2833212 (-) True CI01000030_02824217_02832330
CI01000030_02785349_02803666.mRNA mRNA downstream 409445 2783629 ~ 2803666 (-) True CI01000030_02785349_02803666
CI01000030_02690496_02691051.mRNA mRNA downstream 521624 2690496 ~ 2691487 (-) True CI01000030_02690496_02691051
CI01000030_02688886_02690562.mRNA mRNA downstream 522549 2688478 ~ 2690562 (-) True CI01000030_02688886_02690562
CI01000030_03273527_03314595.mRNA mRNA upstream 56927 3273527 ~ 3314595 (-) True CI01000030_03273527_03314595
CI01000030_03491770_03493119.mRNA mRNA upstream 273519 3490119 ~ 3493741 (-) False CI01000030_03491770_03493119
CI01000030_03545674_03546876.mRNA mRNA upstream 328542 3545142 ~ 3547053 (-) True CI01000030_03545674_03546876
CI01000030_03551269_03557640.mRNA mRNA upstream 334274 3550874 ~ 3558196 (-) True CI01000030_03551269_03557640
CI01000030_03571883_03576733.mRNA mRNA upstream 354425 3571025 ~ 3576907 (-) True CI01000030_03571883_03576733
TU180496 other downstream 680547 2499584 ~ 2532564 (-) False G158980
TU180428 other downstream 761393 2450849 ~ 2451718 (-) True G158914
TU180311 other downstream 1053820 2068000 ~ 2159291 (-) True G158802
TU180273 other downstream 1290980 1920258 ~ 1922131 (-) True G158780
TU181861 other upstream 145202 3361802 ~ 3478867 (-) False G160207
TU181889 other upstream 249753 3466353 ~ 3469162 (-) False G160213
TU181890 other upstream 249753 3466353 ~ 3469162 (-) True G160213
TU182444 other upstream 2202519 5419119 ~ 5423513 (-) True G160713
TU182441 other upstream 2240360 5456960 ~ 5512074 (-) True G160712

Expression Profile