RNA id: TU180663


Basic Information

Item Value
RNA id TU180663
length 2881
lncRNA type antisense_over
GC content 0.44
exon number 6
gene id G159129
representative False

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2944462 ~ 2951345 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGTGAGGAGGGCAGGTGGCCTGCCTCTCTTGGCAAATTACGTGTTTATGTGCCGAGGACACAAAGCCAAGAATGGCAAAACAATCGTGTTGAAGACAAACTAATTTTGGAGCCGACTAGAATTTGCCCACAGATGTGACCAATGGATGTCCAAAAAAATGGAATTCTGGGCTATGTACCAGTAACGCCTCTAACACAGGCAACTTACCTATTCGATCAAGGCGGTCGATGGCTACGGTCTCAAACGCTCTCCTCATCATGGGGTACTCCTCCAGTACTTCATTAAAGTTGTCTACGGAGAGCGAGTACAGTCGGCAATAGGTGTCCGCCCGTACGCTGGCGGTTCGTCTTCCACGGGTCAACAGGCAGATCTCTGAGAATGAACAGGACATATCATGGTTATGGTTCCAGAATCTTCTGTATCTTAGTGTAACAGACGTAGGCTACTAAGAGCTGTGCATGTAAACCTCACTCCCCTGAACTCAAGAGGTGCTCTAGCGACTGACTGTGGTCTTTAGCCTCCTTGTCAGAGCACCCACCTCCCATGCGGACGGGCCCGGGTTTGTGTCCCGCTTGGAGCAGGCAGGTGCGAACTAGAGGGGCTACATTGGTGCCGTGACCAGATGGGAGTGAGGCTTAGGGGGGTGAGTGTAACAGATGTAGGCTAGTAAAAGCTGTGCATGTAAACCTCACTCCCCGGAACTCAAGAGGTGCTCTAGCAACTGACGCTAGAGACTGCGGCCTCCTTGTTAAAGCGCCCACCTCCCATGCGGACGGGCCCGGGGTTCGTGTCCCGCTTGGAGCGGGCAGGTGCAAACTAGAGGGGCTACATTAGTCATTCCTTATTGGTTTTAGATGAGTCTTTAGTACTTGTCAAGCTGGGAGACAAGTTAAGACTAGCTGGCTGTACCTGATGTAAAAAAAAAAAAAGCTTAAACCAGCCTAAGATGGTTTGTTGGTCTTAGTTTTTAGATTAGTTTTTTAGTACTTGTCCAGCTGACAGACTAACTAAGACCAGAGGAACCATCAAAAGCTGGCTGTGCCTAATAGGGGGAAAAAAAAAAACAGCCTAAGATGATTTTCTCACCTTCGCTGGTTTTCCAGCCATGTCAGGCTGGTCCAGATTGCTGGCTTTAAAGTGGTTTCTGTCATTGGTCAGCTGGGTGACCAAGTTCAGTCAGATAAGTCTGGTTTATGCATTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTGCAGGGTCTAAGCTGGTGTTTGGCTGGTCAATCAGCTGCTCTCTTAGACTGACTAGTGGACAAGGGCCAAAAAACCCTTTAAAAGACCATCAAAAAAGACAGACTTGACCAGCTTGGTCTGGTTGGGAGACCACCTAGACCTTTTAGGCTGTTTTAAGTGTTTTTCAGTAGTGTTCGAAACAGAACACATTGAGATTTCACCACAACTGGAGTTGAAACCTGAAAAGGACCTGTCAGTTTGCTTCTTCTCCTAACTACACCTCTTCTCTTTGAGAGGAAGGTCAAACTCAGCATTAAAGAGAGCCCTTCTTCAGCGCCCCTGGCTCCTGGTATATCCGCAGCCTCAGTGAACTCTGCTCCTTGCCCCTCCCAGACCTTGCCCTAAAGACTCTGGAAAAAGCACTGCTTTTTTCTGAATCACCAACTCAAGCCCCTCGAAGAAGGCAGCATCTTAAATGGGACAAAGCTTGCTGGAGGGAGAAACTAAAGAGTCATGTTCAAATGAGCCGTCAGAGAGCTTCATGCCGATATTCCCTTTGGTCAGGACGCTGACTACGCCATGCTGAATGAAATACATCTTCTTGCCGATAGTTCCCTCTCGAATGATGTAATCTGCTGGTTGGAAGACCTCGAAGCGGAGCTTGGTTAACATTGCTGTCACAAAGTTGGGATCTGCGTTGGCGAAGAGCGGCATGGACGCCACTAGCTTCCGGCAGTTGAAGTTGACTATTTCCTGGAGGTGTGGAAATTAGTTTACTGTGAGTTTGAAGACAAGTTATCAATAGTGTACTGTTATCTGTTGGTAACTGGTACCTCTCGTAATGGCTCGTTCAGTTCTTCCAAAATGCTTTCCTCATCGAACATCTTGCCCTGGTATCTGTGCTCATAGTAGTCATGGATCTTCTGCCGGAAGTCGGCCGGAAGTTTGTGGAAAGACATGTATTGCTCAACTTGCTTGTACTGAGAAGATAAAATGGACACAGAGTAAGTGTGTTAGCTGACGTCTCAGGACACACTTTTGACCCAAAATTTCCAACCACCAACATTTGTGTTGCCCATCTTAATCCCACATGGCCTCTTTTGTGGAGAAATGCTGACAGGGAACATTATATGCAGATGAAAGTAAACAAGTAAACATCCAGGCTTGCTTTCCTTTATGGGCTTTTCGGCTATTTTAGGAAGCATCAGTGGAAGTTATTTATGGTGGATGTGATAGACTAAAGAGCATATGATAATATGATGTTCTCAAAGCAGGAAGAGTATGATGAAATAGATGATAAGTTCTATTTATAACACAGCATATGTAGTTAACCATCTCTCTGCAGCAGCATCTGTGCTGTCATGCTTTCTGGTTTAAGTTACAGGAATATGCAGTGCATTTATAGTGTTAAATGGTTTTGGCTATGTATGTTGTGTAGAAATTGGATTATATAGAACAACAAATTATAAATGTATGGATGTTTTAAAGCATATCACTGATTCTTATAACACAGAATACAACACAACTTCACCTGACATTGGTTTTTAAATAACTACATTTTTACTTTGAAAATAATAAGGACATTTTTTTTTTCAAATAAGAAAATATTTCATTTTATTAATGTCCACAAATATTTTGTCAACTGTTACTAACCAAACACCCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180657 lncRNA downstream 17302 2926892 ~ 2927160 (-) True G159124
TU180656 lncRNA downstream 17623 2926495 ~ 2926839 (-) True G159123
TU180655 lncRNA downstream 20987 2923197 ~ 2923475 (-) True G159122
TU180645 lncRNA downstream 66623 2877590 ~ 2877839 (-) True G159112
TU180639 lncRNA downstream 78211 2865602 ~ 2866251 (-) True G159106
TU180692 lncRNA upstream 110096 3061441 ~ 3108585 (-) True G159152
TU180733 lncRNA upstream 159526 3110871 ~ 3115373 (-) True G159183
TU180747 lncRNA upstream 184139 3135484 ~ 3135802 (-) True G159196
TU180754 lncRNA upstream 197991 3149336 ~ 3149550 (-) True G159202
TU180773 lncRNA upstream 269056 3220401 ~ 3220996 (-) True G159218
CI01000030_02824217_02832330.mRNA mRNA downstream 111250 2823974 ~ 2833212 (-) True CI01000030_02824217_02832330
CI01000030_02785349_02803666.mRNA mRNA downstream 140796 2783629 ~ 2803666 (-) True CI01000030_02785349_02803666
CI01000030_02690496_02691051.mRNA mRNA downstream 252975 2690496 ~ 2691487 (-) True CI01000030_02690496_02691051
CI01000030_02688886_02690562.mRNA mRNA downstream 253900 2688478 ~ 2690562 (-) True CI01000030_02688886_02690562
CI01000030_02653346_02655442.mRNA mRNA downstream 288147 2653247 ~ 2656315 (-) True CI01000030_02653346_02655442
CI01000030_02978356_03013342.mRNA mRNA upstream 26429 2977774 ~ 3013507 (-) True CI01000030_02978356_03013342
CI01000030_03213584_03216600.mRNA mRNA upstream 261766 3213111 ~ 3216600 (-) True CI01000030_03213584_03216600
CI01000030_03273527_03314595.mRNA mRNA upstream 322182 3273527 ~ 3314595 (-) True CI01000030_03273527_03314595
CI01000030_03491770_03493119.mRNA mRNA upstream 538774 3490119 ~ 3493741 (-) False CI01000030_03491770_03493119
CI01000030_03545674_03546876.mRNA mRNA upstream 593797 3545142 ~ 3547053 (-) True CI01000030_03545674_03546876
TU180496 other downstream 411898 2499584 ~ 2532564 (-) False G158980
TU180428 other downstream 492744 2450849 ~ 2451718 (-) True G158914
TU180311 other downstream 785171 2068000 ~ 2159291 (-) True G158802
TU180273 other downstream 1022331 1920258 ~ 1922131 (-) True G158780
TU181861 other upstream 410457 3361802 ~ 3478867 (-) False G160207
TU181889 other upstream 515008 3466353 ~ 3469162 (-) False G160213
TU181890 other upstream 515008 3466353 ~ 3469162 (-) True G160213
TU182444 other upstream 2467774 5419119 ~ 5423513 (-) True G160713
TU182441 other upstream 2505615 5456960 ~ 5512074 (-) True G160712

Expression Profile