RNA id: CI01000030_02690496_02691051.mRNA


Basic Information

Item Value
RNA id CI01000030_02690496_02691051.mRNA
length 725
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000030_02690496_02691051
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2690496 ~ 2691487 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGCTTTCTTTGTTCATGTTGTAGCTCAAAAGCTCATCGTGACCTAGTTCCCCTGACCTACTTTTCACAAAACTAGCGCGTCTAATATCGAATGGTTATTTTCATTTCTGCTTTAAAAATTAATACAGTCGACAATCTGAAACCATAGAGCTCAAAAGGGTTTGATAAGGTTAAACATTTCTTTGTGGCAAAATGGCTGCAGCACGCTGTGAGGAAGAGGAGGGGAAGGGTAGAAAATGGCGCTTCCTTGTTGCGCACTTTTAAACACGATGCGTGTGAGCCGCTTGATGAATTCGCTTCCACTTTTCTTCTGTTCAGGCCTTGTTTTTATTTTTACTTTTTTTTTTTCAAACTTTGTTTCTAAATGTTTTGGGTATTAACATTGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTGTAGGATATTCAACATGTCTGACGAGGGAAAGCTCTTCATTGGTGGTCTGAGCTATGATACCACAGAGCAGTCCTTGGAGGAAGCTTTCTCCAAATATGGAACCATTGCCAAAGTTGATGTCATCAGGGACCGTGAGACCGACCGTTCCAGGGGCTTCGGCTTTGTTACGTTTGAAAATCCAGAGGATGCAAAGGATGCAATGGCTGCAATGAATGGAAAGTCTGTTGATGGCCGCATGATTCGTGTTGATGAAGCCGGCAAATCTGGTGGACGGTCTGGTGGCTTCAGAGGAGGTTCTGGAG

Function

GO: NA

KEGG:

id description
K13195 CIRBP; cold-inducible RNA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180569 lncRNA downstream 11778 2678489 ~ 2678718 (-) True G159050
TU180565 lncRNA downstream 26310 2663953 ~ 2664186 (-) True G159046
TU180563 lncRNA downstream 27219 2663060 ~ 2663277 (-) True G159044
TU180540 lncRNA downstream 57345 2630629 ~ 2633151 (-) True G159022
TU180547 lncRNA downstream 83839 2605948 ~ 2606657 (-) True G159029
TU180636 lncRNA upstream 168737 2860224 ~ 2860688 (-) True G159103
TU180637 lncRNA upstream 169286 2860773 ~ 2861233 (-) True G159104
TU180638 lncRNA upstream 169821 2861308 ~ 2861696 (-) True G159105
TU180639 lncRNA upstream 174115 2865602 ~ 2866251 (-) True G159106
TU180645 lncRNA upstream 186103 2877590 ~ 2877839 (-) True G159112
CI01000030_02653346_02655442.mRNA mRNA downstream 34181 2653247 ~ 2656315 (-) True CI01000030_02653346_02655442
CI01000030_02585436_02586251.mRNA mRNA downstream 103020 2585418 ~ 2587476 (-) True CI01000030_02585436_02586251
CI01000030_02491975_02497946.mRNA mRNA downstream 192550 2491169 ~ 2497946 (-) True CI01000030_02491975_02497946
CI01000030_02463443_02465674.mRNA mRNA downstream 224822 2463039 ~ 2465674 (-) True CI01000030_02463443_02465674
CI01000030_02456987_02458132.mRNA mRNA downstream 230908 2456865 ~ 2459588 (-) True CI01000030_02456987_02458132
CI01000030_02785349_02803666.mRNA mRNA upstream 92142 2783629 ~ 2803666 (-) True CI01000030_02785349_02803666
CI01000030_02824217_02832330.mRNA mRNA upstream 132487 2823974 ~ 2833212 (-) True CI01000030_02824217_02832330
CI01000030_02978356_03013342.mRNA mRNA upstream 286287 2977774 ~ 3013507 (-) True CI01000030_02978356_03013342
CI01000030_03213584_03216600.mRNA mRNA upstream 521624 3213111 ~ 3216600 (-) True CI01000030_03213584_03216600
CI01000030_03273527_03314595.mRNA mRNA upstream 582040 3273527 ~ 3314595 (-) True CI01000030_03273527_03314595
TU180496 other downstream 157932 2499584 ~ 2532564 (-) False G158980
TU180428 other downstream 238778 2450849 ~ 2451718 (-) True G158914
TU180311 other downstream 531205 2068000 ~ 2159291 (-) True G158802
TU180273 other downstream 768365 1920258 ~ 1922131 (-) True G158780
TU181861 other upstream 670315 3361802 ~ 3478867 (-) False G160207
TU181889 other upstream 774866 3466353 ~ 3469162 (-) False G160213
TU181890 other upstream 774866 3466353 ~ 3469162 (-) True G160213
TU182444 other upstream 2727632 5419119 ~ 5423513 (-) True G160713
TU182441 other upstream 2765473 5456960 ~ 5512074 (-) True G160712

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041422 True 1012 mRNA 0.47 6 NC_007133.7 18544509 ~ 18546649 (-)