CI01000030_02978356_03013342 (POLRMT)


Basic Information

Item Value
gene id CI01000030_02978356_03013342
gene name POLRMT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2977774 ~ 3013507 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_02978356_03013342.mRNA
AGTAGCAGGTGTTTCATCCTACCTCAAGATAAAATTTGATCGATCTGCTCGTTGATCACTGACTGAGGTCTGGTCTCATTATATCGCCTTTGAACTAGTCAGGTCTGAACAAAATGGCCGCTTTCTGCACGGGATAATGTGGTGTTTCAAAACTATCATGACAACATGTCACTTTTGAGACTGTGTGCCTATTCAGCGGGTTTAACTCGTAGTTTTGCTGTTGACAGGGGTATAAGATTTCTAAATGGCGATTATTGCCGCCTGTGTCTTAGAATACGGAGTAATGGAGAAAGACAAATACAAGACAAAACATGGGCTACAGTTTACCAAAGACACTATTCAGCCATCCCCAAGAAGGAAGATGGGAAGAAAAGATTCTGGGAACAGTCTCAGCTGTTGGATGATGTCAAACATTCAAAGGTGCAAATCATCAAAATGCAGCAGAGACTAAAGAAAATAGCACCTGGGAATAGTCAAAAGAACTTGCCAGGAGAAAAAGCAGAGATGCTTAAAAGTGGGCCTGCTAAAGCTGCTAAAAAAGGTGTAACTGAAGGTGTCACGCCTTTTAAAACTCACGCAAGTCGCTGGATGGAGAAACTCAAGCGTGAAAAGTGGATTAAACCCAAAAACCAAACTTCACATAAAATGCATGACAAGCCAGTTGCAGGTAAAAGCAGCAAAGGGAGTTCAATGATTCCTGCTACATCTACAAAGACCATCACAACGGCTAAGAGGAGTAAGACGAAAACTAAAGTAGAAGCCACTGCGTCTACCACAACATCCTCCAAAGGCAAAGAAAACACTTTGCAAAAAAAGTCTAAATGGAAGGTTTTGAGAGCCTCAGAAAGTTTAGCTGTCAGGTTTCCAGGAGTGCAAAAGGTCTCCAGCAGTGAAGTTGGCTTGGTTTCTGGGATGTCTATTGAAGAGAAACTAGCAGTGGTTACAGATAATGAGTTGGTTAAGGACGAGGAGCTCGATGTAGACCAGCAAAGCTTGACTGCTCCTGAAAAGCTTCTGGAGGATAAGGAAGGAAACCGTTATGGAGATCCTGAGCTCAGAATTCGCTGTTACTTGGAGGCATGTGTGTTCATTGATGATGTATCTCGAGCTCAGAACTGTCTACTATCTCATCACCGTCAGTTATCCAAACGCACGCAACTGTCTATCAGCGCCTACAACGTCATAATGAGGATGTGGGCCAAAAAAGGTTCCATCAATCACATTCGTCGCTTGTTTGTTCTGATTGAAGAAGCAGGTCTGAAACCCAATGTCACTTCTTACTGTGCTGCTCTGGAGTGCATGGGCCGCATGTCTGCGTGTGAAAAATGGATCATTACCAGGTGTCTGCAGCAGATGGAGGTGGACGGCATGTCTGTGGATGATGTGTTCAGCCAGTGCGTGTTTAAGAAGGATGAGAGAGAAATGGTCCTGAGGGCCGTCCGATTAGTGAAACCAGAATACCAACCTCTTGTATCCAAAGATCAGCCTGTCTGTTCCTTGCCATTGGTGGAACAATTTTATGCTGAGAGGGAAGGAGCTACGTATCCTAAACTGGACTTCAGTCTGAAGGAACTGCGGGACCGGTTCAGTCTTCAGCTGGCAATGGAGAAGGCCACTACCATCACTATTGACTCCGTAGAGGCCTTAAAGCCTGTCACCGATCACATGGCCAAAATGGCACTGAAGGAAAAGAAACGGATATTATCCAACAACAGCCAGAGATCCTGGAGTACCTGCATATACCCATACCTGTGTATCCTGGATGATCAGGATTATGTGAATATCATGCTTCAGAGTTTAGACAAACTGTCGCCCAGCGGTGAATCTTTGCTCTTCATGGCTGAGGAGATGGGAAACAGAGTCCACAATCTGTACTGCATCCGGCAGAAGAGCCACAGTCAGATGATTGAGAAGCTTGGGAGTATCTACAGCTCATATGCTGAACTCCTGGCGAACGACACCAAGACCAATGGCATGCTGCCGCGGGAGTGTTGGGCGAGTCTTGAGATGGAGAAGTGCAGCGGCCCCTCTCTTTTAAGTGACGACACCCCTTGGCCGCTGGTCCTGATGGTGCAGCTGGGCAGCTTCCTGGTTGACCTGATGGTTCATGAGCTCAAAGTTCGAAGCAACATCCTCAATACCGCTCAAGAGAAGAAGCTCATTCCCGTTCTATACCACATGTACACATTCCGCAGCAATCATAAGATCGGCTTCATCAAACCACATCCTATTGTGACACAAATCCAGAGGGTTGCGATGGAAACCAAACTTACATTTGATTCCTACGTCATGCCCATGTTGTGTCCGCCCGTGCCCTGGACGTCCCCAAAGAGCAGCGCGTACCTGCTGACGCCCACTAAGTTGATGCGCGCCACCGACGGAGCCATCCAACACCAACTTCTCCTGGAGAAGAGCCGGGATGAAGATCTCCATGCTGTGCTGGACTCCCTCAATCAGGTGGGCAACTGTCCCTGGAGGATCAACAAACCCCTGTTGGACATCATCATCTCGATATTCAACGACAAAGGCAGCGACAAGCTCTGCGTCCCTCCACCGCTGTCAGAAGCGCCTGAGATTCCTCGCTTTAATCCTCATGACCCGTCCTACACTCAGATTGAGAAGGCCTACATGAAGTGGGAGGGAGTCAAAGCCAAGAAGAAGGTGGCGGAGATGCACAGTCTCCGAATGGACGCACTGTATAAGCTGTCCATCGCCAACCACATGAGGGATGAGATCTTTTGGTTTCCCCATAATATGGACTTCCGAGGTCGTACGTACCCCCGTCCGCCTTATTTTAACCACCTTGGCAGTGACGTGACCAGGGCCTTACTGGTGTTTGCAGAGGGACGACCTCTCGGTCCCAAGGGCCTCGACTGGTTGAAGATCCACCTGGTGAACCTCACGGGGTTGAAGAAGCGTAGCTCACTAGCTGGAAGATTGGAGTATGCTGAGAGCATCATGGAGGACATCCTAGACTCGGCAGACCATCCTCTTGACGGTCGTAAATGGTGGATGAATGCAGATGAGCCGTGGCAGGCACTGGGTTGCTGTATGGAGATAGCAAATGCTTCGCGCTCACCCGACCACACCAAATTCATCTCCTATTACCCTGTACATCAGGACGGCTCTTGCAACGGCCTCCAGCACTATGCTGCCCTCGGGCGGGATGTGATTGGTGCTACTTCGGTGAACCTCATGCCCTGTGAACTGCCTCAGGATGTCTACAGTGGTGTAGCTCAGCAGTTGAATATAGTCATCACTTGCCTCACAAATTGCCTCTTAAATTGCTTCACAACACATGGTCTCAAAGCTCCAGTTTTCATTTCCTTTCATTTCTGGGAAGACTGCGTGTTTCTTAGAGAACACTATCTGAGATATATTGACCTACCTATCGATTTGACTATATTTGGGGACATAGTGTACACTCTTAATACACTGTTGTACCATTCTTGCCAAAAAACCTCGGGTTGCACTAACCTTAGCCGAAGGGTGGAAGAGTTCAGGGCTCGGGATGCAGAGAAGGGTTTGAAGATCGCACAGGTGCTGGAGGGCTTCATCAGCAGGAAGGTGGTGAAGCAGACAGTGATGACTGTGGTCTATGGCGTCACTCGCTACGGGGGTCGTCTGCAAATCGAAAAGCGACTAAAAGAAATCGATGATTTCCCTAAGGATTACATATGGGATGCTTCACATTACCTGGTGGTTCAGGTTTTCAACAGCTTGAAGGAAATGTTTACTGGGACGAGAGAGATTCAGGAATGGCTGACGGAGAGCGCTAGGCTAATAGCTAAGTCTGGGAGAACAGTGGAGTGGGTGACACCGCTGGGACTTCCTATTGTTCAGCCCTACCACAGAATTAAGAACCAAACGCAAGTTGCAAGCCTTGCACTTGAACAGAAACTCGATTCATTTGACATTTTCTCCTTTTTGAAAGGCACTACGGTTGATGGGTCAAGGTCAAAGGTCGATCATGTCCAACACCATTTAGACCATCATCCACATTATAGCGAGTCTATATTTATTTCACCTAGCGCTGGAGACACGCTAGGCGGTCACACCAGGGGTTTGCAGTTCCCTTGTAAATGTCACACTGACCAGATTAATGTAGCACCATCAAGACCCCTATTAATCACCACTGAGCCCCAGCTCTACCTCCACCTGTTCGCCGTACCACCCCGTACATGAATGAACCGGCATGATGGATCTTAATGACCCTTAATGGTGTTGTGTAAAGAATGAATTTTACAGCCCCTTTTTATAGTTATCGCTTTTATTATAGTTTTCATTTCATTATCATATTGGGTTATTTATGTCTGAGGGGAACCCGTAGTGGTCTGCCAGGCTTGACAGATTGTCAGCTTTGTGGTTTTAAAGTATCTGGGTCTTCCGTGCACAGTGCAGTTTGCTAATGAGGATTTTTGCTGTGATTGAGGCTCAACTGTTTGACAGGGTCTAAGAACCTGGTACGTGAGGTGCATTAAGCTCTGTGCAGACCATATTGCATGCCTGTATCTTCTCCATTAACATGAAATCAAACGTCATGTGTACTTGTTTTTTCTTTTCCAAAGTCACCATAAAATTAAAATGACCCTTTTTGTTTAATACTCATCCCTGGTCTAGCTCTTACCCAAAAATGAAAATTCTCTTATCTTTTACTCACCCATGTTTCAAACACTTATTACTTATTTTCCCTCGTGGAACACAAAACAAGATAATGAATGTGATGTCAGCTTGATTAATTGTACTGTAACTTAAACACGTAATAAA

Function

symbol description
polrmt Predicted to enable DNA-directed 5'-3' RNA polymerase activity and mitochondrial promoter sequence-specific DNA binding activity. Predicted to be involved in mitochondrial transcription. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of mitochondrial DNA-directed RNA polymerase complex. Is expressed in brain; eye; and gut. Orthologous to human POLRMT (RNA polymerase mitochondrial).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function

KEGG:

id description
K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_02978356_03013342.mRNA True 4767 mRNA 0.47 18 2977774 3013507

Neighbor

gene id symbol gene type direction distance location
CI01000030_02824217_02832330 ATP5D coding downstream 144562 2823974 ~ 2833212 (-)
CI01000030_02785349_02803666 MIDN coding downstream 174108 2783629 ~ 2803666 (-)
CI01000030_02690496_02691051 NA coding downstream 286287 2690496 ~ 2691487 (-)
CI01000030_02688886_02690562 NA coding downstream 287212 2688478 ~ 2690562 (-)
CI01000030_02653346_02655442 NA coding downstream 321459 2653247 ~ 2656315 (-)
CI01000030_03213584_03216600 C10H19ORF70 coding upstream 199604 3213111 ~ 3216600 (-)
CI01000030_03273527_03314595 CELF5, CELF5A coding upstream 260020 3273527 ~ 3314595 (-)
CI01000030_03491770_03493119 CELF5A coding upstream 476612 3490119 ~ 3493741 (-)
CI01000030_03545674_03546876 RXFP3.2B coding upstream 531635 3545142 ~ 3547053 (-)
CI01000030_03551269_03557640 CREB3L3A coding upstream 537367 3550874 ~ 3558196 (-)
G159129 NA non-coding downstream 26429 2944462 ~ 2951345 (-)
G159124 NA non-coding downstream 50614 2926892 ~ 2927160 (-)
G159123 NA non-coding downstream 50935 2926495 ~ 2926839 (-)
G159122 NA non-coding downstream 54299 2923197 ~ 2923475 (-)
G159112 NA non-coding downstream 99935 2877590 ~ 2877839 (-)
G159152 NA non-coding upstream 47934 3061441 ~ 3108585 (-)
G159183 NA non-coding upstream 97364 3110871 ~ 3115373 (-)
G159196 NA non-coding upstream 121977 3135484 ~ 3135802 (-)
G159202 NA non-coding upstream 135829 3149336 ~ 3149550 (-)
G159218 NA non-coding upstream 206894 3220401 ~ 3220996 (-)
G158980 NA other downstream 445210 2499584 ~ 2536375 (-)
G158914 NA other downstream 526056 2450849 ~ 2451718 (-)
CI01000030_02155901_02157314 NA other downstream 818483 2155584 ~ 2157390 (-)
G158780 NA other downstream 1055643 1920258 ~ 1922131 (-)
G160213 NA other upstream 452846 3466353 ~ 3469162 (-)
G160713 NA other upstream 2405612 5419119 ~ 5423513 (-)
G160712 NA other upstream 2443453 5456960 ~ 5512074 (-)
G160949 NA other upstream 2783790 5797297 ~ 5800426 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location