CI01000030_02785349_02803666 (MIDN)


Basic Information

Item Value
gene id CI01000030_02785349_02803666
gene name MIDN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2783629 ~ 2803666 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_02785349_02803666.mRNA
TTTGCCTCATGAATGGTGTGGAATTGGTAAGAGTGGGCTGGAACTCCAGGACTGGAGCTCCTCGCCCACTCAGATTGGATTTGTCCTCAATGAGGAAAGCGTTGTGGGGGAGAGAAAGGAGGCAGGGTTTGCGCTCCACGTGGGCTATCGAATGGACCAGCATCCGAGCGCCCGGAGCTGCAGCAGTCGCGGAGCTGCGCCGTCCTGCGAGAGCGTCTCCGGCGAGCCCCCCATGAATTTGTACATCCACTCCACCACCGGCACACGCTTCGAGCTCTCCCTTCCCGCAGAAGAGACCGTGGAAGGGCTAAAGCGAAGACTCTCTCAAAGACTGAAAGTCCCCAAAGAAAGACTCGCTCTGCTACACAAAGAAACACGCCTGAGTTCAGGAAAACTCCAAGATTTGGGAATAACGGATGGGAGCAAGTTAACACTGGTTCCGACAGTTGAAGCAGGCCTAATGTCTCAAGCATCGAGACCTGAGCAGTCAGTAATGCAGGCACTGGAGAGCTTGACGGAAACACAGAATGATATTAGTCAACACAATCGTGCCGCCACAACGACTGTAAAAAGCGATCTGCACTACATGATACCTACCCTTCTTGCCATATGGAATAAGGGTCTCCTTGTCTGGCTCTCCATGTTTGTCAGTGAAATGCACAGAGTGGTAAAGGTCAGTGATTTCCTGTCTGGCCGGTCTCCTTTAACCCTGGCTCTGCGAGTAGGCGATCATATGATGTTTGTCCAACTGCAGTTGGCAGCACAGCACACAGGCGGCCCACAGTTGCAGCATCGGCATCTCATATCACGCGGGAGTTCAGAGGGCACGACAGGACAGTCTCATGGAGCTTCAGGCTCTGGGATGGCGAGGGTTTCACACAACCCCCACCCACATCATCCGCACCCACATCCTCACCATCCAAACACAAAGCTCCCATCTAACCCTGCGGCCTTCCCACCTTCCCCCTCTATCCCACCCGTTCCTCCCATGTACCCCACCTCAGCCTCAGGGCACTGTAGCCCTCCACCGAACCCCTCTCAACTCCCTGGAAGTTTTCTTCACTCCCCGCAGCCATCTTCGGCCTGTCCCACCTCTCCAAGCAGCCCCAGTCCTGCAGCTTCCTGTCCAGAGGCCAACTGCCCAGCAAAGACGTCCGGCAACTGTAACACTCCCTCGCGATCCCGCAAACCAGGCGCTATCATTGAAAGTTTTGTGAACCATGCTCCTGGAGTCTTTTCTGGGACATTTTCAGGCACTTTGCATCCCAACTGTCAGGACAGCACCGGACGTCCCAGGCGGGACATAGGCACCATCCTTCAAATCTTGAATGACCTTTTGAGTGCCACCCGGCATTACCAGGGCATGCCACCATCACTCACGCAGCTCCGCTACCAGACCCAGTGCAACAGCCCAAGTTCGCCAGTACCATCACCACCACCCTCACCTCCCCACACCCCCGGACTAACCGGTCTGCCTACCACAGTGCCCTCTGAGATTCAGCCCACCCTCCACCCACTGGTGCAGTGCCAGAGCCAGATCCGTATGTGCAAGCCTCCTGAAGGTCCAAGACAAGTGTGTAAGGATAAGAAAAGTGAAGATGTTAGAGAGGGGGAGGAAGAACTAGGCTTGTTCTTTCAGGCCCTGGTAGTCATGCTTCAGCAGCCACAGCATGTCTGGCTTTGTCTCTGTGCTGATGGTGTCCTCTTTCCTCTGAGAGGCAAAGAATGGGGGTGGACTACTCTGTTACCAAGAGGAAGGAGGCAGAGAGCCAGAGCGAGAGAGATAACGAAGCGAGATAGCACTCACAGACGTGTGGCAGGTACCCCGCTCTGTCTGCAAGAGGAGGCAGAGGGAAAATACCAAGAGTCCATTCATAAAATGTGTTTGTTATATCCGGCCAGTGACTGCCCACTGATTAACTGGCACTTCCTCTTGGGCAAGAGAGAAAAAAGGGAAGGGTGCTGGGCCTATTTTCTGGACAAAACTGCCTTGCTTGTCAACATGTTTGTGAACCCATGGTGTAGGATTTTTGTAGTTAGGTCCCTTGGGGCACTGCAGCCTCATGCAGCAAGGTTTTTTTCACCAGCCCCAGTTGGTATGCAGAGAAGAGCTGACAGGCTGCAAGGAGACCGACTGCGTCAGACGGAGAACCGAGCCACACGCTGCAAGGTGGAGCGACTGCAGCTGCTCATGCAGCAGAAGCGCCTGCGCAGGAAGGCCCGGCGAGACTCTCGTGCCCCGTACCACTGGCTCCCCAACCGCAAGGCCGGGCGCAGCAACAGTAACAGCAGTATGTCTAGCGAAGGCTCCTTGGACCTGGACTTTGAGGACTCTGTGTGGAAGCCCGACGTCAAAGCTGATATGAAATCGGAGTTCATCATGGCCTGAAGCAGCAATGGTTGCACCATTTTCGAGGAAGACTGGGGTTTACACTTTAGAGAGGAGAATTTCCGAAGACTGTACACACAGATGCACATTTAGAATCTGGCAGGTTTTACTCCTCGTCTCTCCTGTGACCACAAAGACTTTACACAAAGGAAGATTCACAGACTTTTACTTACTTTACATCCTTGATAGACTACGATCTTGGAATAGACTAAGTTTCCAAATGACAATGTTTGGATATGGATTGGACTGATGAATAGACAGAATTTGGACTCTGAACGTCCAAGAAGTAAACACAAATGAGCATAGCAGACATCATCGGTGTTGGGATTTGTTTTTCTCTTTCCTTTTTTATGTTTTTCTTTTTTATCCAGGGGGAAGATCTATACCGACCATATAAAGGGCACGATGAACTGACAAAAATCAGATACTGACCTACTTCCTCCTTTTTTCGTTACGAATGGGCATTCACAGTTCAAGAATCATTTGAAGGGGGTTATCTTCTTTGTTTTCAAGTCCTGTTTTTCTTGAAACATGATGATTTCTGAAACAATATGTAGCATTACCCACAAAGCATTCAGGTTTTTTATCTTGTAGACGAGGAGGGTTCATTTGCACACACACCTGTGATTTGAAATAGACAAATGATATCATAACATAAGAGATGGCACAGTGCATGTTTAGTATATAAATGTACAAAAAAAATACAAAAAAGTCTTTCTCAACAACATCTCAGTAGTCAGAGGTTCAAGTAGGAAACTAAAACATGAAACGAAACATAAATATGCTGATGCGATTGAAGATACCAGGCTTGTGAAGTCGGTTGTTTTTAGTATATATAAAGAACGACTTTCCTTTTTTTACCTCCGTGAAAACAAACAAACCAACCAACCAAATGTAAAACAGCAGTTGCTCAGCAAGGCTCAAGTCACGCTGTGAAATGAATCTGATGTTATATAATCATTTAAATACATTACTGTCTAAATGTGTATAATGGAGAGAGTGGTGGGGTGCCAGAGAAATAGTTTACAAATGTACATTATAATGGCAAAGTGGAATCTCTCATTTATGCATTCACCTAAAACAACCCGTCTGGTTTTATCCCAGCAAACACTTACAGTTGTTACAAAATTTCAACAAGATTACCCTTATTTGTCCATTCGGCCAGACTTCTTTGCAGATTCCCACGTAAACATCCAGACCACAGCGTATCCCCCACCTTCACACTCTTGATAGTGCCTCATATGTAGACGCACTGACATATTCAATCAGGCGTTCCACAGACAGACGGTTCTGCTGCTATATGGGATTTCTCTTTGCATGCAAAAGTGTGAATTATCCTGATCCTTTTTTGTAGAAGAAAATAATAATAATAATAATAATAAGAATAACAACAATACTGAGAAACTGGTGCTGAAAAGAAAAGATAAACAAGCATGAATTTGTGAAAAATGGAAGAAAAAAAAAGACATTTGCCCCAACTATTTTGGGATTTTTGAATTAGAAACGTGATGTTACATATCAGTCGTAAACCAAAACGGGACTGGAATTCTACTGTACATGGATCATTCCTGGACTAACTAAGGAACAATGGAACATTTTCTATTCCCAATATCCAAGGGATCCTCAGAGCAAACCCCGGCACTCCCATTGACCTGTCCAGATGCAGACTAACAGGGATGTTAGCAACCAACATTTGCCCCAATGACTACTTGGAAATAAA

Function

symbol description
midn Predicted to be located in cytosol and nucleolus. Predicted to be active in nucleus. Is expressed in several structures, including axis; basal plate midbrain region; lens placode; nervous system; and presumptive diencephalon. Orthologous to human MIDN (midnolin).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_02785349_02803666.mRNA True 4109 mRNA 0.48 13 2783629 2803666

Neighbor

gene id symbol gene type direction distance location
CI01000030_02690496_02691051 NA coding downstream 92142 2690496 ~ 2691487 (-)
CI01000030_02688886_02690562 NA coding downstream 93067 2688478 ~ 2690562 (-)
CI01000030_02653346_02655442 NA coding downstream 127314 2653247 ~ 2656315 (-)
CI01000030_02585436_02586251 TSSK6 coding downstream 196153 2585418 ~ 2587476 (-)
CI01000030_02491975_02497946 TMEM161A coding downstream 285683 2491169 ~ 2497946 (-)
CI01000030_02824217_02832330 ATP5D coding upstream 20308 2823974 ~ 2833212 (-)
CI01000030_02978356_03013342 POLRMT coding upstream 174108 2977774 ~ 3013507 (-)
CI01000030_03213584_03216600 C10H19ORF70 coding upstream 409445 3213111 ~ 3216600 (-)
CI01000030_03273527_03314595 CELF5, CELF5A coding upstream 469861 3273527 ~ 3314595 (-)
CI01000030_03491770_03493119 CELF5A coding upstream 686453 3490119 ~ 3493741 (-)
G159050 NA non-coding downstream 104911 2678489 ~ 2678718 (-)
G159046 NA non-coding downstream 119443 2663953 ~ 2664186 (-)
G159044 NA non-coding downstream 120352 2663060 ~ 2663277 (-)
G159022 NA non-coding downstream 150478 2630629 ~ 2633151 (-)
G159029 NA non-coding downstream 176972 2605948 ~ 2606657 (-)
G159103 NA non-coding upstream 56558 2860224 ~ 2860688 (-)
G159104 NA non-coding upstream 57107 2860773 ~ 2861233 (-)
G159105 NA non-coding upstream 57642 2861308 ~ 2861696 (-)
G159106 NA non-coding upstream 61936 2865602 ~ 2866251 (-)
G159112 NA non-coding upstream 73924 2877590 ~ 2877839 (-)
G158980 NA other downstream 251065 2499584 ~ 2536375 (-)
G158914 NA other downstream 331911 2450849 ~ 2451718 (-)
CI01000030_02155901_02157314 NA other downstream 624338 2155584 ~ 2157390 (-)
G158780 NA other downstream 861498 1920258 ~ 1922131 (-)
G160213 NA other upstream 662687 3466353 ~ 3469162 (-)
G160713 NA other upstream 2615453 5419119 ~ 5423513 (-)
G160712 NA other upstream 2653294 5456960 ~ 5512074 (-)
G160949 NA other upstream 2993631 5797297 ~ 5800426 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110507736 LOC106573601 misc NC_048565.1 CM023219.2 21535882 ~ 21565723 (-)
tiger barb (Puntius tetrazona) G151345 LOC107655225,LOC107554818,LOC107728568,LOC107687715,LOC107599463 non-coding NC_056720.1 CM032089.1 10151480 ~ 10162446 (+)