RNA id: TU181916


Basic Information

Item Value
RNA id TU181916
length 436
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G160238
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3501980 ~ 3502415 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCTTACACAACCTTCTTAATGCTGCTACCAAAGGAGGTCAAGGGTTCACATACTTTTTCCCACCACGCACTGCAAATGTTTACATGGTTTCTTCATGAAAAAGTATCAATGTTTTTCTCTTGCTAAAGAGCAGATAAAATGTAATGATCATTCCAAAGAGTTCACATACCTTTTCTGCAGACGTTCAAACTCACTGCTCTTCCTCTTAAGATCTTCTTACACAATCCTCTTACTGCTGCTACCGAAGGAGGTCAACCAGTTATAAAATCCAAGGGTTCGCATACTTTTTACAACGTGCACTGTGAATGTTAATGGTGTGTTCAAAAGTTAACACGAAAGAGTATCAATGTTTTTTCTTGCTGAAGGTCAGATAAAATGTAATGATCAATCCTAAGGGTTCACATACTTTTTTCTGCAGATGTTCAAATTCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181864 lncRNA downstream 8880 3416011 ~ 3478867 (-) False G160207
TU181867 lncRNA downstream 8880 3416011 ~ 3478867 (-) True G160207
TU181873 lncRNA downstream 31252 3413307 ~ 3470728 (-) False G160207
TU181879 lncRNA downstream 39784 3453210 ~ 3462196 (-) True G160208
TU181885 lncRNA downstream 49359 3441799 ~ 3452621 (-) True G160211
TU181917 lncRNA upstream 96 3502511 ~ 3502887 (-) True G160239
TU181926 lncRNA upstream 6415 3508830 ~ 3509087 (-) True G160245
TU181971 lncRNA upstream 28826 3531241 ~ 3531473 (-) True G160289
TU181977 lncRNA upstream 38405 3540820 ~ 3541604 (-) True G160295
TU181980 lncRNA upstream 74963 3577378 ~ 3577582 (-) True G160298
CI01000030_03491770_03493119.mRNA mRNA downstream 8239 3490119 ~ 3493741 (-) False CI01000030_03491770_03493119
CI01000030_03273527_03314595.mRNA mRNA downstream 187385 3273527 ~ 3314595 (-) True CI01000030_03273527_03314595
CI01000030_03213584_03216600.mRNA mRNA downstream 285380 3213111 ~ 3216600 (-) True CI01000030_03213584_03216600
CI01000030_02978356_03013342.mRNA mRNA downstream 488473 2977774 ~ 3013507 (-) True CI01000030_02978356_03013342
CI01000030_02824217_02832330.mRNA mRNA downstream 668768 2823974 ~ 2833212 (-) True CI01000030_02824217_02832330
CI01000030_03545674_03546876.mRNA mRNA upstream 42727 3545142 ~ 3547053 (-) True CI01000030_03545674_03546876
CI01000030_03551269_03557640.mRNA mRNA upstream 48459 3550874 ~ 3558196 (-) True CI01000030_03551269_03557640
CI01000030_03571883_03576733.mRNA mRNA upstream 68610 3571025 ~ 3576907 (-) True CI01000030_03571883_03576733
CI01000030_03632671_03646877.mRNA mRNA upstream 130057 3632472 ~ 3646877 (-) True CI01000030_03632671_03646877
CI01000030_03647991_03655331.mRNA mRNA upstream 144829 3647244 ~ 3655331 (-) True CI01000030_03647991_03655331
TU181861 other downstream 8880 3361802 ~ 3478867 (-) False G160207
TU181889 other downstream 32818 3466353 ~ 3469162 (-) False G160213
TU181890 other downstream 32818 3466353 ~ 3469162 (-) True G160213
TU180496 other downstream 969416 2499584 ~ 2532564 (-) False G158980
TU180428 other downstream 1050262 2450849 ~ 2451718 (-) True G158914
TU182444 other upstream 1916704 5419119 ~ 5423513 (-) True G160713
TU182441 other upstream 1954545 5456960 ~ 5512074 (-) True G160712
TU182698 other upstream 2294882 5797297 ~ 5800426 (-) True G160949
TU183215 other upstream 2630960 6133375 ~ 6133500 (-) True G161355
TU183395 other upstream 3198640 6701731 ~ 6704145 (-) True G161511

Expression Profile