RNA id: TU185849



Basic Information


Item Value
RNA id TU185849
length 362
lncRNA type intronic
GC content 0.50
exon number 1
gene id G163586
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8751423 ~ 8751784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTCTCTGTCTGGCAATCCAATGGACAAGTCTGGGTTTGGCGGTTACCAGGAGAACGGTACTTGCCTGACTGCATTGTGCCAAGGGTAAAGTTTGGTGGAGGGGGGATTATGGTGTGGGGTTGTTTTTCAGGGGTTGGGCTTGGCCCCTTAGTTCCAGTGAAAGGAACTCTTAATGCTTCAGCATACCAAGACATTTTGGACAATTTCATGCTCCCAACTTTGTGGGAACAGTTTGGGGATGACCCCTTCCTGTTCCAACATGACTGCGCACCAGTGCACAAAGCAAGGTCCATAAAGACATGGATGAGCGAGTTTGGTGTGGAGGAACTTTACTGGCCTGCACAGAGTCCTGACCTCAACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185841 lncRNA downstream 57039 8694133 ~ 8694384 (-) True G163579
TU185638 lncRNA downstream 59854 8678015 ~ 8691569 (-) True G163390
TU185837 lncRNA downstream 100846 8650253 ~ 8650577 (-) True G163575
TU185827 lncRNA downstream 129492 8619616 ~ 8621931 (-) True G163568
TU185826 lncRNA downstream 132023 8619182 ~ 8619400 (-) True G163567
TU185873 lncRNA upstream 29954 8781738 ~ 8782023 (-) True G163603
TU185875 lncRNA upstream 30908 8782692 ~ 8782932 (-) True G163605
TU185868 lncRNA upstream 34890 8786674 ~ 8786936 (-) True G163598
TU185881 lncRNA upstream 48423 8800207 ~ 8800566 (-) False G163610
TU185882 lncRNA upstream 48517 8800301 ~ 8800566 (-) True G163610
CI01000030_08729507_08739473.mRNA mRNA downstream 11908 8728693 ~ 8739515 (-) True CI01000030_08729507_08739473
CI01000030_08704610_08727738.mRNA mRNA downstream 23669 8704532 ~ 8727754 (-) True CI01000030_08704610_08727738
CI01000030_08671133_08672774.mRNA mRNA downstream 78649 8671092 ~ 8672774 (-) True CI01000030_08671133_08672774
CI01000030_08638306_08669065.mRNA mRNA downstream 82358 8637618 ~ 8669065 (-) True CI01000030_08638306_08669065
CI01000030_08597072_08624990.mRNA mRNA downstream 126004 8596956 ~ 8625419 (-) True CI01000030_08597072_08624990
CI01000030_08804429_08811448.mRNA mRNA upstream 52486 8804270 ~ 8812570 (-) True CI01000030_08804429_08811448
CI01000030_08825422_08836502.mRNA mRNA upstream 73457 8825241 ~ 8837127 (-) True CI01000030_08825422_08836502
CI01000030_08880986_08884756.mRNA mRNA upstream 129169 8880953 ~ 8884771 (-) True CI01000030_08880986_08884756
CI01000030_08919811_08923927.mRNA mRNA upstream 167771 8919555 ~ 8923927 (-) True CI01000030_08919811_08923927
CI01000030_08934545_08939716.mRNA mRNA upstream 182459 8934243 ~ 8939719 (-) False CI01000030_08934545_08939716
TU185749 other downstream 558937 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 959041 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1013419 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1601279 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1825766 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 181629 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 535422 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 723404 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1363731 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1533945 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile