RNA id: TU185638


Basic Information

Item Value
RNA id TU185638
length 1059
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G163390
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8678015 ~ 8691569 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACATTCGTGAGTGACAGACACACCCCAAAGCTGAGGATTTCTGGCGTTTGAGCAGCACTGAGCGGATTTCTGTCGCTGCAATGTACACGCACCGTTAAACATATGTTTGACAACGCGCGCTCAGCACCGATCACCTACTAAAGACCTGCTATGGGAAATGAAGACGTAAGTTTGGCTGGCACTGCTGTTAATCGTCCCCAAAGTTTAGAAGACAGACTGACTCCAGAGACTGGAGTTTTGGAATCTTGCCACGTGACGATCAACAAGCGTCAAAGACAGAAAAGCACTGAAAGTGTTTCAAATACTTCTGAATTCTTATTGCACGTCATACTGAACGGCGGATTGTTTTCACAAACAAGTGCTGATCTGTTTGGACTGGAGGTTTAGCTGCGTTATGTCAGAGGAGCAAGGAAAGGACTGTTCCTCTGAGATGAGTCTTCCAGAGGAACAAAGTGTAAAGTCAGGCTTATGTGTGTCCAGCTCTGAGTCTGTGAAGAGTGGCCAGTCAATGGAAAGACTACCGTTCTTAAGTGAGAAAACACCATCATCTTCCAGGTATTTCATGTGTTTTACATTACATTGCTCTTTTAGCTAATTTCTGTGTTTATTGTGTTTCTTGTTCTAGATTTGTAGCTTCAATATAGTGAAGAACTGCACCTACAAGAATATATTTCATGTGTTTCTCTAAAATTATTGACAATGTATAGACAAAATATACAGTGGAGTTCATATAAAAAATCTAGGATTCAAAGTCAAATCCTGGAAATAAATAGAATGTTGAAACATTTAAAGCAAACATTGTAATAAAGGGAAAAACAAAATCAAAACATTGGTGCATTTACAGTATAGTGTACGTTGAACAATACAATAAATTTAGACTTTGAATAGTGATTTTAAAGTTGAGAATCAATAAGGATTCATTAACAATATGTTCAAATCTAATTATTATAATGCAAGTTCATGTTCATTAAATTTTCATTTTCATTAATACAATTACACAGGAAGCCACTAGGGTGCATAAATTCACTATTGAAAGACAGAACAGGCAATATACAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185837 lncRNA downstream 27438 8650253 ~ 8650577 (-) True G163575
TU185827 lncRNA downstream 56084 8619616 ~ 8621931 (-) True G163568
TU185826 lncRNA downstream 58615 8619182 ~ 8619400 (-) True G163567
TU185824 lncRNA downstream 65895 8611921 ~ 8612120 (-) True G163565
TU185812 lncRNA downstream 161480 8504004 ~ 8516535 (-) True G163554
TU185841 lncRNA upstream 2564 8694133 ~ 8694384 (-) True G163579
TU185849 lncRNA upstream 59854 8751423 ~ 8751784 (-) True G163586
TU185873 lncRNA upstream 90169 8781738 ~ 8782023 (-) True G163603
TU185875 lncRNA upstream 91123 8782692 ~ 8782932 (-) True G163605
TU185868 lncRNA upstream 95105 8786674 ~ 8786936 (-) True G163598
CI01000030_08671133_08672774.mRNA mRNA downstream 5241 8671092 ~ 8672774 (-) True CI01000030_08671133_08672774
CI01000030_08638306_08669065.mRNA mRNA downstream 8950 8637618 ~ 8669065 (-) True CI01000030_08638306_08669065
CI01000030_08597072_08624990.mRNA mRNA downstream 52596 8596956 ~ 8625419 (-) True CI01000030_08597072_08624990
CI01000030_08561763_08584396.mRNA mRNA downstream 93619 8561763 ~ 8584396 (-) True CI01000030_08561763_08584396
CI01000030_08543066_08553404.mRNA mRNA downstream 124101 8542785 ~ 8553914 (-) True CI01000030_08543066_08553404
CI01000030_08704610_08727738.mRNA mRNA upstream 12963 8704532 ~ 8727754 (-) True CI01000030_08704610_08727738
CI01000030_08729507_08739473.mRNA mRNA upstream 37124 8728693 ~ 8739515 (-) True CI01000030_08729507_08739473
CI01000030_08742145_08754205.mRNA mRNA upstream 50471 8742040 ~ 8755601 (-) True CI01000030_08742145_08754205
CI01000030_08804429_08811448.mRNA mRNA upstream 112701 8804270 ~ 8812570 (-) True CI01000030_08804429_08811448
CI01000030_08825422_08836502.mRNA mRNA upstream 133672 8825241 ~ 8837127 (-) True CI01000030_08825422_08836502
TU185749 other downstream 485529 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 885633 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 940011 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1527871 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1752358 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 241844 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 595637 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 783619 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1423946 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1594160 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile