RNA id: TU185824



Basic Information


Item Value
RNA id TU185824
length 200
lncRNA type intronic
GC content 0.36
exon number 1
gene id G163565
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8611921 ~ 8612120 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATAATGTCCTGGCTTTTCCAAGCTTTATAATGGCAGTGAATATAGGATGAGATTTTGAAAAAAGTGCATCCATCCATCATAAAAGATATCCACACGGCTCTGGGGGGATTAATAAAGGCCTTCTGACGCTAAACAATGCGTTTGTGTAGGAAAAATATCCATATTTAAAACTTTAAAAACTAAAATAACTAGCTTCCGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185812 lncRNA downstream 95386 8504004 ~ 8516535 (-) True G163554
TU185810 lncRNA downstream 97950 8483405 ~ 8513971 (-) True G163552
TU185651 lncRNA downstream 145632 8463777 ~ 8466289 (-) True G163403
TU185657 lncRNA downstream 179748 8429952 ~ 8432173 (-) True G163409
TU185806 lncRNA downstream 187030 8424630 ~ 8424891 (-) True G163549
TU185826 lncRNA upstream 7062 8619182 ~ 8619400 (-) True G163567
TU185827 lncRNA upstream 7496 8619616 ~ 8621931 (-) True G163568
TU185837 lncRNA upstream 38133 8650253 ~ 8650577 (-) True G163575
TU185638 lncRNA upstream 65895 8678015 ~ 8691569 (-) True G163390
TU185841 lncRNA upstream 82013 8694133 ~ 8694384 (-) True G163579
CI01000030_08561763_08584396.mRNA mRNA downstream 27525 8561763 ~ 8584396 (-) True CI01000030_08561763_08584396
CI01000030_08543066_08553404.mRNA mRNA downstream 58007 8542785 ~ 8553914 (-) True CI01000030_08543066_08553404
CI01000030_08498082_08533503.mRNA mRNA downstream 77765 8497827 ~ 8534156 (-) True CI01000030_08498082_08533503
CI01000030_08492487_08494184.mRNA mRNA downstream 117590 8492302 ~ 8494331 (-) True CI01000030_08492487_08494184
CI01000030_08479752_08485957.mRNA mRNA downstream 124592 8479651 ~ 8487329 (-) True CI01000030_08479752_08485957
CI01000030_08638306_08669065.mRNA mRNA upstream 25498 8637618 ~ 8669065 (-) True CI01000030_08638306_08669065
CI01000030_08671133_08672774.mRNA mRNA upstream 58972 8671092 ~ 8672774 (-) True CI01000030_08671133_08672774
CI01000030_08704610_08727738.mRNA mRNA upstream 92412 8704532 ~ 8727754 (-) True CI01000030_08704610_08727738
CI01000030_08729507_08739473.mRNA mRNA upstream 116573 8728693 ~ 8739515 (-) True CI01000030_08729507_08739473
CI01000030_08742145_08754205.mRNA mRNA upstream 129920 8742040 ~ 8755601 (-) True CI01000030_08742145_08754205
TU185749 other downstream 419435 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 819539 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 873917 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1461777 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1686264 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 321293 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 675086 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 863068 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1503395 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1673609 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile