RNA id: TU185657



Basic Information


Item Value
RNA id TU185657
length 2222
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G163409
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8429952 ~ 8432173 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GACATTTTTATTTGAAAGAAAGCTGTTTACAATGTCAAGAGCAGGAGTCAGCTCAAATCTTGAAGGGAAAAGAGATTACATATACGCCAACTCACAACTCTTTGAGTTGATCTGAATCTCACACTTGAAACTGCATGAAGATGAACTCTGTAACAAATTCAGATGATGTTTCATTGTCCTTTCACTTGTTGCAGATGGTTAGGGCAGATTTATATAGAAGAGATTTTATAGCTCATTAAGCTCAATGTTTTATTGGGTCACATTTGGTCAGGACACAGTATCACATTTGAATGTGCTGGATCTGAAGGTGAACTACTTGCAGTGATTTCAAACATTTGTTTTTTGTATGACTGAGTAAAGAAGATAAGACGACATGGAGGGCAATGTTACAGCTTGTCTCCAGTATGGATTCGCTTGTGTTTTTTCAGGTTTCCTGACTGACTGAATCTCTTGTCACAGTGTGAACACTTGTAAGGTTTCTCTCCAGTGTGGATCCTCTCATGTGCTTTCAGGTTTCCCGACTGCCTGAAAACCTTGTCACAGTGTGAACACTTGTAAGGATTTTCTCCTGTGTGGATCCGCTCATGTATTTTCAGATATTCTGACCATTTGAAACTCTTGTCGCAGTGTGAACACTTGTAAGGTTTTTCTCCAGTGTGGAACCGCTCATGTAATTTCAGATATTCTGACTGACTGAATCTCTTGTCACAGAATGAACACTCGTAAGGTTTTTCTCCAGTGTGCGTCCTCTCATGTATTTTCAGATGTCCTGACTGACTGAATCTCTTGTCGCAGTGTGAACACTTGTGAGGCTTTTCTCCAGTGTGGATTCTCTCGTGTGTTTTCAGAGAACCTAATCGATTGAATCTCTTGTCACAGTGTGAACACTTGTAAGGTTTTTCTCCAGTGTGGATCCTCTGATGCCGCTTCACTTCACCATCTGTAAAAAAGGTCTTCCCACAACCAAAACACACATGATTTTTCACACCGCTGTGTCTTTTCTGGTGTACTTTTAAGTTACTCAGCTGACTAAAACTATTTCCACAGAAAGAACACATGTAAGGCTTCTCCTGTGTATGAATATTCATGTGGTCCTTCAGTGTACGTGCCCTAAAAAATGTTTTACCGCACTGATCACAGGTAAATGGTTTTTCTCCAGAATGAGAATGCACATGTAAATTAAAAGCGCTTACACGTGTGAAACTCTTCCCACACTGATCACATGTGTGCGGCTTCTCTCCAGTGTGGATTGTCATGTGTTCATTAAGGGCTCTTCTTTTTGTGAAACTCTTCCCACATTGATCACATGTGTGCGGATTCTCCCCGGTGTGGATTTTCATGTGTACATTAAGGGCTCTTCTTTTCGTGAAACTCTTCCCACACTGATCACACGTGTGTGGCTTCTCTCCAGTGTGGAATTTCATGTGAATTTTAAGGGTTCCTTGTTGTACAAAACTCTTCCCACATTGATCACATGTGTGTGGTTTCTGTCCAGCGTGGATTTTCATGTGTCTCTTCAGACTTGCTTTTTCTGTAAAACTCTTCCCACACTGAAGGCAGGTGAAAGATTTTTTCAATAAATTGCTTTCAGTCTGTGAGTGACTTGAATGTTTTTCACCAGTTTTGACATGATGTTTCTCCTTTGCTTCTCTCAGTTCTTCACTCTCCTTGTTGTCTTCCATCAGGTCTAAAATGAAAGAAAAGTTAAATTTTCAGTAATCATAAAATGTAGAAAAATGAGAAGGGAAAGGACAAAAAAAGTTACCTTGATGTAATATCAGAATGAAGCCATTACCTATTTTTTCTCCTTTTTTCAGATATTTTCTGAAATCTGATATATATATCCATTTCCAAATCGCTTATCCTATGTAGGGTCACAGCGATCCTGGATATTATCAGCGTCTCACACCATAGGCGAGGAAACACACTGGATTGATTCACACAGAGTTCACAGATTACAGTGTTCACAGATAGGGTAACTTGCTTTGCTTTAATTACTAAAAATAGTGCTGTCAGCATGTATTTGTGACAAAATTATAAAAATAAATAAAACATTAATAAATCTGATAACATGCCATTCAAGGTGAACATTAATTAAATTATGATTTGGTTTACAGATAAACCAGTAGAAATTTGGCAATAAATTTTATATTACCATCATGGCTACATTTACAAAACCTTGCAGTGTTGCTTTGCTATGAACGTTTATCCTAGTATTTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185806 lncRNA downstream 5061 8424630 ~ 8424891 (-) True G163549
TU185801 lncRNA downstream 24718 8405000 ~ 8405234 (-) True G163544
TU185800 lncRNA downstream 54889 8374785 ~ 8375063 (-) True G163543
TU185798 lncRNA downstream 70216 8359522 ~ 8359736 (-) True G163541
TU185797 lncRNA downstream 72826 8356894 ~ 8357126 (-) True G163540
TU185651 lncRNA upstream 31604 8463777 ~ 8466289 (-) True G163403
TU185810 lncRNA upstream 51232 8483405 ~ 8513971 (-) True G163552
TU185812 lncRNA upstream 71831 8504004 ~ 8516535 (-) True G163554
TU185824 lncRNA upstream 179748 8611921 ~ 8612120 (-) True G163565
TU185826 lncRNA upstream 187009 8619182 ~ 8619400 (-) True G163567
CI01000030_08399321_08402641.mRNA mRNA downstream 27028 8399163 ~ 8402924 (-) True CI01000030_08399321_08402641
CI01000030_08393024_08396689.mRNA mRNA downstream 33204 8391989 ~ 8396748 (-) True CI01000030_08393024_08396689
CI01000030_08367669_08379327.mRNA mRNA downstream 49070 8367352 ~ 8380882 (-) True CI01000030_08367669_08379327
CI01000030_08350086_08366927.mRNA mRNA downstream 62873 8349698 ~ 8367079 (-) True CI01000030_08350086_08366927
CI01000030_08335819_08343892.mRNA mRNA downstream 84054 8335563 ~ 8345898 (-) False CI01000030_08335819_08343892
CI01000030_08440613_08441821.mRNA mRNA upstream 8371 8440544 ~ 8441836 (-) True CI01000030_08440613_08441821
CI01000030_08450632_08457703.mRNA mRNA upstream 18003 8450176 ~ 8457975 (-) True CI01000030_08450632_08457703
CI01000030_08467514_08479103.mRNA mRNA upstream 35300 8467473 ~ 8479252 (-) True CI01000030_08467514_08479103
CI01000030_08479752_08485957.mRNA mRNA upstream 47478 8479651 ~ 8487329 (-) True CI01000030_08479752_08485957
CI01000030_08492487_08494184.mRNA mRNA upstream 60129 8492302 ~ 8494331 (-) True CI01000030_08492487_08494184
TU185749 other downstream 237466 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 637570 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 691948 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1279808 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1504295 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 501240 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 855033 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 1043015 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1683342 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1853556 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile