RNA id: CI01000030_08335819_08343892.mRNA



Basic Information


Item Value
RNA id CI01000030_08335819_08343892.mRNA
length 3135
RNA type mRNA
GC content 0.38
exon number 6
gene id CI01000030_08335819_08343892
representative False

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8335563 ~ 8345898 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAGCTTTTATTTGAGAACAAAAGGAATGAAAGTCCCGCTTGAATGATAGCATTTACTGGTCCTTTATTTTTGTGAAGCAGGTGTGAACTGAGATACAAAAATGAAAACCTGCTTCAGTTCTGACAGCAGGAGCCAATAAAAGCTGCTCAAGGCAGGTTTCTATATACAAATATGGAAACATGATACAGCTTCACCGCCACCGTTGCTGTTTTAAATACGCCCATTTGATCAGGACTGGTGCATTTGACTGGTGAAGGTTTAAATGTTGAATGTAGCATGTTGAACATTTTGGGACATTGGGGAAAAAAAAAAAAAACATTGTTTCAAAACAGTTCAAAGTAAATAGCAGAAAACTTTGCATGGTTTGTGAATATATTTGTCCTGATGGTGGTGGTTAAAACTGAACAGGACCCATTCTCATTGCACCAACATATGCCGATCAACAGCAACAGACACTTCGTTGGGTTTGGCTCTTGTTCTTGCTGATTGAACATGTCCAATCGTGAGAAAGTTACAAGATGTTTTGTCTTAGCTGTGAAGGAAATAGTGGCCTACCAGAACCCAAGGTTTCGAAAGAAAAAAAAACCCTCTAGATGTTAACTGAGAAGAACAAAGTTGTTTCGGTATCTTGGTGGTCTAGGGGTCATACATTATAACTGTTTGAATAGCATCCTACCATTCTACTCTAGTACATACTATGTGAACATAATGTACATTTCTGAATCCATACGTGGAAGCATCCTGATGTTACCTGATGTAAACTCTGTGGTTTGCAGAGCACAATCATCAGACTCTGTTGGAGAGAGAGTCACGTTTGTTGGGTTTTGTCAGATCCCCTGTTGGCATTGGTCGGCACTTTTTCGCCACTTGAATATGTTGATTCAGTGTTTGTAGGGTGTTGGAATGTCTGGGAAGTGGCAAACTGTATTCTGGTGATCTGAAGTGTGAATCAGCCTTTATATGACAGTTTCGGTCTGGTTGAATCTCTCTGTGAATTATGGCAAGAAACATGGCTGTGTTGCTGAAAATGTGTGCACAGACAAAGCAATCTATATCCATCAATCCCGGATATACTCCTAGCCACTATTTGCATGCGGCATCAAGTTTCATCCCACTGCTTCTGCTGTGCCTCACCCTCTTCCCTACTATTTGCATATCATATGAGTTCCTTAGTATAATGAGTATTGAATACACAACATATAATCCAATAAATATTAGGCAACATGTGTTCATGCTTCATATAAATGTGTTTAAAGATGTGTCATGAGGAGATCTTCCCAGATAAACCCTGGATCCTCCCAAAGTTTCCTCCTTATCTACAGTAAATAAACATATTAATTGATGGGCCCTTTACAAATTATACAGGCAACTCAGCAACAGTTTGAGATGATAAAACCCATGATCAAAATTGGATGAACTTCATAACTCTGCAGTGCACTGTTTAATTTGACAGATATTGGGAAAAAGCATGGTGATTTAATGTGAAAGTATGTAAATTGGTGAATTATTAAAATATAATTACTTCTTGACAAAATTATTTTAGAAAATTATATATGAAATATATATTACATATATATAAACACTATTACCTACTTTGAAAGAACAGGAATTAGGAGAGGGATTCACAATAAAGTTCATCAGAACTAAGCGCTGTTTGTTCTAGTGGAGATAAAACTGATCACTATGAAAACAGTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTATGAGGGAGGGTGTGTAGAGTGTAGAGTGTAGCGTATACAAGCTACGCCTAGATCCTTTTTCAGAACGGACTCTAAAAAATGTGAACCTAATGGAATCTTCATTTGATTATTTCTTGATTTTAATTCTTCCTATGGATATATTTTTGTTATTAAAAATGTGAAGGAACTTGTGAAGGAACTTGTGACCTGAGAATGGAGTACTGGATAGTTTAAATGTTTTTTTTCTCACGTCATGTTTGGATGTATACTGTTGAGTTTTTGAGAAGTTCAGAATAATGATTCACAGCACATCTTTCTTTGGTCTGTTTTTCATGCTTTTGAATGGTGTGTTTGGTGACACAGATGAAGTGAAGTCAGTGTCAGTGATGGAGGGAGATTCTGTCACTCTACAGACTAATGTTACTGAAGTACAGAGAGATGATCATATACTGTGGACGTTTGGACCTCGAGGGACTCGCATAGCTGAAATTCACAGACAGAATATCTATATAGATGCCACTGGTACAACATTTGAGAAAATACTCCAGATAGACAATCAAACTGGATCTCTGACCATCAGAAACATCAGATCTGAACACACTGGACTTTATAAACTCCAGATCGTCAGCAACATCAGAGGAACTTCAAACCAGAGATTCAGTGTGACTGTCTATGCTCGTCCTCCCGTTCCTGCCATTACCAGAGACTCTTCAGACTGTTCATCATCGTCATCAGTGTCCAATTGTTCACTGCTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAACATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAACGACACCTACAGCTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGGACAACATCACACAACTCTGTCAGACTCACACATGTTCAGAACAACGTTCAAGTTTCATGATGGCAATAGCTCTTATAGCGCCGCTGCTGCTGGTGGTCATAGCTGTAGTTGCAGTTAACACTCATGATGAAGAGATGCATTACGCTGAACCAACATTCTGTACACAGCCGCTTCAGAGTATGGATGTCATTGCAGAAGATTGCACAGTGTACTCAACTGTTGTCATATAAATTTAAGATCCAGCAGAATGTTTTTTTATTGTTCTACTGCAGGTTGATGGCATGAATTCTGGCAATTCACCCAATCTAATCACTTTGACATCATTAATGTTTTACTCTGTTTCATTACATTTCATTTAGGAGCAACTAAAGTTAAAGTTTGATGTCAGATTAGCAAGGTCATTTTTGTCAATGTGTCTTATTGTTTCACTCCACCTTTTTTATAGTACCAAGTCAGTATTTCCGTAAAGAATATATCAGTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185780 lncRNA downstream 24431 8310901 ~ 8311132 (-) True G163528
TU185772 lncRNA downstream 51081 8284251 ~ 8284482 (-) True G163520
TU185770 lncRNA downstream 56548 8278807 ~ 8279015 (-) True G163518
TU185766 lncRNA downstream 66372 8268910 ~ 8269191 (-) True G163514
TU185765 lncRNA downstream 67921 8267374 ~ 8267642 (-) True G163513
TU185797 lncRNA upstream 10996 8356894 ~ 8357126 (-) True G163540
TU185798 lncRNA upstream 13624 8359522 ~ 8359736 (-) True G163541
TU185800 lncRNA upstream 28887 8374785 ~ 8375063 (-) True G163543
TU185801 lncRNA upstream 59102 8405000 ~ 8405234 (-) True G163544
TU185806 lncRNA upstream 78732 8424630 ~ 8424891 (-) True G163549
CI01000030_08328834_08331465.mRNA mRNA downstream 4023 8328102 ~ 8331540 (-) True CI01000030_08328834_08331465
CI01000030_08232550_08241049.mRNA mRNA downstream 94514 8232101 ~ 8241049 (-) True CI01000030_08232550_08241049
CI01000030_08201019_08203601.mRNA mRNA downstream 131918 8200166 ~ 8203645 (-) True CI01000030_08201019_08203601
CI01000030_08185866_08194632.mRNA mRNA downstream 138297 8184897 ~ 8197266 (-) False CI01000030_08185866_08194632
CI01000030_08175807_08180515.mRNA mRNA downstream 154670 8174922 ~ 8180893 (-) True CI01000030_08175807_08180515
CI01000030_08350086_08366927.mRNA mRNA upstream 3800 8349698 ~ 8367079 (-) True CI01000030_08350086_08366927
CI01000030_08367669_08379327.mRNA mRNA upstream 21454 8367352 ~ 8380882 (-) True CI01000030_08367669_08379327
CI01000030_08393024_08396689.mRNA mRNA upstream 46091 8391989 ~ 8396748 (-) True CI01000030_08393024_08396689
CI01000030_08399321_08402641.mRNA mRNA upstream 53265 8399163 ~ 8402924 (-) True CI01000030_08399321_08402641
CI01000030_08440613_08441821.mRNA mRNA upstream 94646 8440544 ~ 8441836 (-) True CI01000030_08440613_08441821
TU185749 other downstream 143077 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 543181 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 597559 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1185419 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1409906 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 587515 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 941308 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 1129290 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1769617 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1939831 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile