CI01000030_08175807_08180515


Basic Information

Item Value
gene id CI01000030_08175807_08180515
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8174922 ~ 8180893 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_08175807_08180515.mRNA
ATTTTTTAGAATTAGCACATATAAGTCCAATAAATGATCTGAACAATTAAAATTATATGTATTGCGTATGTGCAGACCAGAATAATCATCACAATAAATGTATTGCAGTCACTTAATATAATCTAGGTCAGGTACTGTACCTAAGTTGTGTACCAAAAGTGTGGTTTGTACCAGTGGAACGTGCAAGTTGTGCACAACAATGAGTTTTGAGAGTTGGATGCGTGGTTGTGTGTGCATGTGCGGTACCAGTGTAGGTGGATGAGGTGCTTTCACTGGCCTGACATTAATACTGCCATATATAAGCTTTAAAAATCTCTAGCAGAGGCAAATACTAAAGATTAAAGAGTGAATCAAGCATATGTTAGTTGTGATATTATCATGTTGATATGTTTCAAAAACCTAAGCTGGAATGACCAGCTGGTAGCTGGTTTCTTGCTGGTCCAAGATGATCAGCAAGCTTGGACCGGCCTCAAACCATTTATGTTCCAAAACACAGTAACCATTTTCCAGATACGTATCAGATCCGTGTTCCTGTCGTTTGTCCATCGGATAGTCTACTTGGCCGTTCTTTATTCACATCATGTGGGATTCAGTTATCTTTACGACAAAATGTTGAGGATTATTATCAGAAAAACAACGTTCTTTGGTCTTTTTCTGTTGTTCATGGATGGTGTGTTTGGTGATTCAGATGGAGTGAAGTCAGTGTCAGTGCTGGAAGGAGATTCTGTCACTCTAAACACTGATGTTACTGAAGTACAGAGAGATGATCAGATACTGTGGATGTTTGGACCTCGAGAGACTCGAATAGCTGAACTCTATAAGAAGATCATTGATATGTTTGGCAGTAATGTGACCTTTGGAGACAGACTCCAGATGGACAGTCAAACTGGATCTCTGACCATCAGAAACATCAGAACTGAACACACTGGACTTTATAAACTACAGATCCGCAGCGACAGAGGGAACTCAGACAAGATATTCAATGTTACTGTCTACGCTCCACTGCCCATTCCCATCATTACTGGATCTTCCCCACAATGTTCTTCATCATCATCAGGATCATCCAGATGTTCACTGCTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATGAAAACACCTACAGCTGTGTGATCAACAATCCCATCAGAAACCAGACTCAACATCTGGACAACATCAGTCAACTCTGTCACACATGTGCAGGAAATTATTTCAAACCATCTGCACATGCAGCTGAAACTGTTCAGATAGACCAGGAGGAGGTAGTTTACACTGAAACAACATTTGTACAAGATGTACAAAACAAGAAGCCTAATGGGACAGAAGAGACTGTATACTCCACCGTCATAAAGCACTGATCTAACAACCAGCTTATCAAACAGTTTTGCACAACTGCATCTGTCAGCTTTAAAACACTGGACCGAGCCGAGGAGAACCTGAATGACTCATTCATCACCTATTTATCTTTTTTTCTGCCTATTTTCATCTCAAAAGAAGATACTCCAAAAAATTGGACCCTATTTACTTTCATTGTATGGACAAAAACACAGAGACATTTTTGACATAAAGTCATACAGGTTTGGAACTACATACAGTAAGGGTGAGTTAACGATAAGTACATAATACTCTTTAAGTTGATCTCATTGTGGCAGGGCCAGCCTGTCTAATAACAGAAAGGAAAACTGTTTTTAAACTGAAAGACCTGGACTGAACATTTTGCATATCCAAATTCCCCTCTGACAAAAATATTTTGCATGCAGACACAGCAAAAGTCAAAAAGACCACAAAAAAAAACCAACAACAAAAAAACAAAAACAAACAACAAATGACTTTAATCTTGTAGAAGAGCAAAGTTGCATGTTTAATGCATTGTTCTCAGATCAGAGACGTCTCACATCTTGTTTCTCAACTTGTCTGCAGTTGTGTTCTGCTGTATATCCATGAAATAACTAGCAATTATGTAGGTCCTCAGGGTAAATTTGCTTGTGCAAAGCTGCAAAAACTCCAGCTTCACCTCTGCTATCATTCCAGTAATCGTTACCTGTCTGTCCTGTATCATAGCATAACAAGCCATTACATGTCTTGTCATGCAATATCGCTTTACACTCACAGGTGTTACATCTGCTGAATTTCTATATCCAAAGCTCAAAGTTCCTGTAGCTAGCCTACTGGTTTGTATTTCTAATCTGTGGCTTGAACTTGATGTTGAACCACAAATTACAGAAGTGTATGGGTAAAATAAA

Function

NR:

description
Si:ch211-222k6.3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_08175807_08180515.mRNA True 2337 mRNA 0.39 6 8174922 8180893

Neighbor

gene id symbol gene type direction distance location
CI01000030_08144020_08149228 TBC1D20 coding downstream 25694 8143888 ~ 8149228 (-)
CI01000030_08128628_08130625 RPP14 coding downstream 44297 8128462 ~ 8130625 (-)
CI01000030_08123594_08127280 PXK coding downstream 47435 8123192 ~ 8127487 (-)
CI01000030_08101126_08107526 PDHB.S, PDHB, PDHB.L coding downstream 67240 8100868 ~ 8107682 (-)
CI01000030_08096309_08096995 KCTD6B, KCTD6, KCTD6A coding downstream 77927 8094843 ~ 8096995 (-)
CI01000030_08185866_08194632 NA coding upstream 4004 8184897 ~ 8197266 (-)
CI01000030_08201019_08203601 NA coding upstream 19273 8200166 ~ 8203645 (-)
CI01000030_08232550_08241049 NA coding upstream 51208 8232101 ~ 8241049 (-)
CI01000030_08328834_08331465 NA coding upstream 147209 8328102 ~ 8331540 (-)
CI01000030_08335819_08343892 NA coding upstream 154670 8335563 ~ 8345898 (-)
G163496 NA non-coding downstream 5342 8169356 ~ 8169580 (-)
G163495 NA non-coding downstream 6096 8168518 ~ 8168826 (-)
G163398 NA non-coding downstream 7829 8165097 ~ 8167093 (-)
G163493 NA non-coding downstream 18316 8156371 ~ 8156606 (-)
G163479 NA non-coding downstream 161632 8013054 ~ 8013290 (-)
G163500 NA non-coding upstream 28848 8209741 ~ 8209978 (-)
G163507 NA non-coding upstream 65545 8246438 ~ 8246812 (-)
G163511 NA non-coding upstream 78160 8259053 ~ 8259386 (-)
G163513 NA non-coding upstream 86481 8267374 ~ 8267642 (-)
G163514 NA non-coding upstream 88017 8268910 ~ 8269191 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other downstream 382540 7788797 ~ 7792198 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other downstream 436918 7735436 ~ 7737720 (-)
G163139 NA other downstream 1024778 7149474 ~ 7150144 (-)
G163065 NA other downstream 1249265 6924483 ~ 6925657 (-)
CI01000030_06747047_06752255 NA other downstream 1422511 6746960 ~ 6752411 (-)
G163873 NA other upstream 752520 8933413 ~ 8933982 (-)
CI01000030_09277337_09294501 NA other upstream 1106313 9276431 ~ 9294802 (-)
G164071 NA other upstream 1294295 9475188 ~ 9476264 (-)
CI01000030_10103451_10131419 NA other upstream 1934622 10102944 ~ 10133765 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location