CI01000030_08335819_08343892


Basic Information

Item Value
gene id CI01000030_08335819_08343892
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8335563 ~ 8345898 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_08335819_08343892.mRNA
AAGCTTTTATTTGAGAACAAAAGGAATGAAAGTCCCGCTTGAATGATAGCATTTACTGGTCCTTTATTTTTGTGAAGCAGGTGTGAACTGAGATACAAAAATGAAAACCTGCTTCAGTTCTGACAGCAGGAGCCAATAAAAGCTGCTCAAGGCAGGTTTCTATATACAAATATGGAAACATGATACAGCTTCACCGCCACCGTTGCTGTTTTAAATACGCCCATTTGATCAGGACTGGTGCATTTGACTGGTGAAGGTTTAAATGTTGAATGTAGCATGTTGAACATTTTGGGACATTGGGGAAAAAAAAAAAAAACATTGTTTCAAAACAGTTCAAAGTAAATAGCAGAAAACTTTGCATGGTTTGTGAATATATTTGTCCTGATGGTGGTGGTTAAAACTGAACAGGACCCATTCTCATTGCACCAACATATGCCGATCAACAGCAACAGACACTTCGTTGGGTTTGGCTCTTGTTCTTGCTGATTGAACATGTCCAATCGTGAGAAAGTTACAAGATGTTTTGTCTTAGCTGTGAAGGAAATAGTGGCCTACCAGAACCCAAGGTTTCGAAAGAAAAAAAAACCCTCTAGATGTTAACTGAGAAGAACAAAGTTGTTTCGGTATCTTGGTGGTCTAGGGGTCATACATTATAACTGTTTGAATAGCATCCTACCATTCTACTCTAGTACATACTATGTGAACATAATGTACATTTCTGAATCCATACGTGGAAGCATCCTGATGTTACCTGATGTAAACTCTGTGGTTTGCAGAGCACAATCATCAGACTCTGTTGGAGAGAGAGTCACGTTTGTTGGGTTTTGTCAGATCCCCTGTTGGCATTGGTCGGCACTTTTTCGCCACTTGAATATGTTGATTCAGTGTTTGTAGGGTGTTGGAATGTCTGGGAAGTGGCAAACTGTATTCTGGTGATCTGAAGTGTGAATCAGCCTTTATATGACAGTTTCGGTCTGGTTGAATCTCTCTGTGAATTATGGCAAGAAACATGGCTGTGTTGCTGAAAATGTGTGCACAGACAAAGCAATCTATATCCATCAATCCCGGATATACTCCTAGCCACTATTTGCATGCGGCATCAAGTTTCATCCCACTGCTTCTGCTGTGCCTCACCCTCTTCCCTACTATTTGCATATCATATGAGTTCCTTAGTATAATGAGTATTGAATACACAACATATAATCCAATAAATATTAGGCAACATGTGTTCATGCTTCATATAAATGTGTTTAAAGATGTGTCATGAGGAGATCTTCCCAGATAAACCCTGGATCCTCCCAAAGTTTCCTCCTTATCTACAGTAAATAAACATATTAATTGATGGGCCCTTTACAAATTATACAGGCAACTCAGCAACAGTTTGAGATGATAAAACCCATGATCAAAATTGGATGAACTTCATAACTCTGCAGTGCACTGTTTAATTTGACAGATATTGGGAAAAAGCATGGTGATTTAATGTGAAAGTATGTAAATTGGTGAATTATTAAAATATAATTACTTCTTGACAAAATTATTTTAGAAAATTATATATGAAATATATATTACATATATATAAACACTATTACCTACTTTGAAAGAACAGGAATTAGGAGAGGGATTCACAATAAAGTTCATCAGAACTAAGCGCTGTTTGTTCTAGTGGAGATAAAACTGATCACTATGAAAACAGTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTATGAGGGAGGGTGTGTAGAGTGTAGAGTGTAGCGTATACAAGCTACGCCTAGATCCTTTTTCAGAACGGACTCTAAAAAATGTGAACCTAATGGAATCTTCATTTGATTATTTCTTGATTTTAATTCTTCCTATGGATATATTTTTGTTATTAAAAATGTGAAGGAACTTGTGAAGGAACTTGTGACCTGAGAATGGAGTACTGGATAGTTTAAATGTTTTTTTTCTCACGTCATGTTTGGATGTATACTGTTGAGTTTTTGAGAAGTTCAGAATAATGATTCACAGCACATCTTTCTTTGGTCTGTTTTTCATGCTTTTGAATGGTGTGTTTGGTGACACAGATGAAGTGAAGTCAGTGTCAGTGATGGAGGGAGATTCTGTCACTCTACAGACTAATGTTACTGAAGTACAGAGAGATGATCATATACTGTGGACGTTTGGACCTCGAGGGACTCGCATAGCTGAAATTCACAGACAGAATATCTATATAGATGCCACTGGTACAACATTTGAGAAAATACTCCAGATAGACAATCAAACTGGATCTCTGACCATCAGAAACATCAGATCTGAACACACTGGACTTTATAAACTCCAGATCGTCAGCAACATCAGAGGAACTTCAAACCAGAGATTCAGTGTGACTGTCTATGCTCGTCCTCCCGTTCCTGCCATTACCAGAGACTCTTCAGACTGTTCATCATCGTCATCAGTGTCCAATTGTTCACTGCTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAACATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAACGACACCTACAGCTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGGACAACATCACACAACTCTGTCAGACTCACACATGTTCAGAACAACGTTCAAGTTTCATGATGGCAATAGCTCTTATAGCGCCGCTGCTGCTGGTGGTCATAGCTGTAGTTGCAGTTAACACTCATGATGAAGAGATGCATTACGCTGAACCAACATTCTGTACACAGCCGCTTCAGAGTATGGATGTCATTGCAGAAGATTGCACAGTGTACTCAACTGTTGTCATATAAATTTAAGATCCAGCAGAATGTTTTTTTATTGTTCTACTGCAGGTTGATGGCATGAATTCTGGCAATTCACCCAATCTAATCACTTTGACATCATTAATGTTTTACTCTGTTTCATTACATTTCATTTAGGAGCAACTAAAGTTAAAGTTTGATGTCAGATTAGCAAGGTCATTTTTGTCAATGTGTCTTATTGTTTCACTCCACCTTTTTTATAGTACCAAGTCAGTATTTCCGTAAAGAATATATCAGTATTAAA
>TU185791
GGGTCATACATTATAACTGTTTGAATAGCATCCTACCATTCTACTCTAGTACATACTATGTGAACATAATGTACATTTCTGAATCCATACGTGGAAGCATCCTGATGTTACCTGATGTAAACTCTGTGGTTTGCAGAGCACAATCATCAGACTCTGTTGGAGAGAGAGTCACGTTTGTTGGGTTTTGTCAGATCCCCTGTTGGCATTGGT

Function

NR:

description
Si:ch211-222k6.3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_08335819_08343892.mRNA False 3135 mRNA 0.38 6 8335563 8345898
TU185791 True 210 lncRNA 0.41 1 8345049 8345258

Neighbor

gene id symbol gene type direction distance location
CI01000030_08328834_08331465 NA coding downstream 4023 8328102 ~ 8331540 (-)
CI01000030_08232550_08241049 NA coding downstream 94514 8232101 ~ 8241049 (-)
CI01000030_08201019_08203601 NA coding downstream 131918 8200166 ~ 8203645 (-)
CI01000030_08185866_08194632 NA coding downstream 138297 8184897 ~ 8197266 (-)
CI01000030_08175807_08180515 NA coding downstream 154670 8174922 ~ 8180893 (-)
CI01000030_08350086_08366927 NA coding upstream 3800 8349698 ~ 8367079 (-)
CI01000030_08367669_08379327 NA coding upstream 21454 8367352 ~ 8380882 (-)
CI01000030_08393024_08396689 NA coding upstream 46091 8391989 ~ 8396748 (-)
CI01000030_08399321_08402641 NA coding upstream 53265 8399163 ~ 8402924 (-)
CI01000030_08440613_08441821 NA coding upstream 94646 8440544 ~ 8441836 (-)
G163528 NA non-coding downstream 24431 8310901 ~ 8311132 (-)
G163520 NA non-coding downstream 51081 8284251 ~ 8284482 (-)
G163518 NA non-coding downstream 56548 8278807 ~ 8279015 (-)
G163514 NA non-coding downstream 66372 8268910 ~ 8269191 (-)
G163513 NA non-coding downstream 67921 8267374 ~ 8267642 (-)
G163540 NA non-coding upstream 10996 8356894 ~ 8357126 (-)
G163541 NA non-coding upstream 13624 8359522 ~ 8359736 (-)
G163543 NA non-coding upstream 28887 8374785 ~ 8375063 (-)
G163544 NA non-coding upstream 59102 8405000 ~ 8405234 (-)
G163549 NA non-coding upstream 78732 8424630 ~ 8424891 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other downstream 543181 7788797 ~ 7792198 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other downstream 597559 7735436 ~ 7737720 (-)
G163139 NA other downstream 1185419 7149474 ~ 7150144 (-)
G163065 NA other downstream 1409906 6924483 ~ 6925657 (-)
G163873 NA other upstream 587515 8933413 ~ 8933982 (-)
CI01000030_09277337_09294501 NA other upstream 941308 9276431 ~ 9294802 (-)
G164071 NA other upstream 1129290 9475188 ~ 9476264 (-)
CI01000030_10103451_10131419 NA other upstream 1769617 10102944 ~ 10133765 (-)

Expression


Co-expression Network