RNA id: CI01000030_08367669_08379327.mRNA


Basic Information

Item Value
RNA id CI01000030_08367669_08379327.mRNA
length 2553
RNA type mRNA
GC content 0.35
exon number 6
gene id CI01000030_08367669_08379327
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8367352 ~ 8380882 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGCCAGTAGATAAAAGACATCTATGTTAGTATCATCAGGAACCATTTGATACTGCTGCAGATCTGTCAAGCTGTATTCCACTGATGTGAGTATGATATTGTTTCACTTGACACAACAGGAATTTCTATGAATAGATTTGACATATGTGTAAATATTATTTTAGCCAGGGTTAATAAGTAAATTCTAGGATAAAGACTTAAAAATACCAGAGGTGGAAAGTCCAGGGGTCAGAAAGTAAAAGTCCTGCCATATTTTTATTCCACCCACTGAAGCAGTGTTAAAGTTAATGAGATAAATAAGTGTTTAATTGAGGTGATGATTGACCATTATTGATATTAACAAGCAGAATCGNNTGAAGATACCTGATGTTAACAAGCAGAATCGCCAAAGGAGAAAAATCACAATTTTTAAGAAACCATCACAGAGGTCAGGGTTTGCTTTAGTTGGGCTCTTGACCCTTGACTTTTTAATGTTAGATTTTGTTTGGGCTGTTGTATCTGTTTTATAGCAACCAGACAAGCAAAGTTAAAAGATGATCAGGTGGTGTTGGTTATGTTTTCACATCATCACTATTTGATCTGAATCACTGAACTCAGCCCAATCTCTGAGTTAGATTTACATTATTGATTTATTCCTTATTTTATTCATTATCTTTGCTTGTCTGGTTGTTATAACTCAGTTACAACAGTACAAACAAAACCTAACATTAAAAAGTCAAGGGTCAAGAGCCCAACTAAAGCAAACCCTGACCTCTGTGATGGTTTCTTAAAAATTGTGATTTTTCTCCTTTGGTGATTCTGCTTGGTAACATCAGGTATCTTCACCTCAATTAAACACTTATTTATCTCATTAACTTTAACACTGCTTCAGTGGGTGGAATAAAAATATGGCAGGACTTTTACTTTCTGACCCCTGGACTTTCCACCTCTGAAAAATACTAGACCCTAAGAGGCACTCTACATCTAAAAGACTTGTTTTTCAACATCAACTTGAAATATATGTTTATATAATGTGTATATATATCTCATGTTTCTTCTCATGTCAATTACCATAATGATGACAGGAAATCCACCTTTAAGACAATACAAACAACATTAGCAAAATACCTTGAAATCTGTCTTTACATGTGAGAGAAAGTTCTGATTTGAGTAAAGCAGAGCTGAATTTAATATAGCAAACTTTTGGGCAAAAAAAAAAAAAAAGAACAAATTTAATATACTGAACTAAACAAATGTACTGCAGTTGTGGACTAACTACACAAATCATGTACTTGAGTAAAACTACAGATACCCAAATAAAATATTACTCCAGTAAAAGTATTTGAAACAGTGAGTTGCTGACTTGAGAACAGATGTAGTGAAGTAAAAGAGATTTTTCATTATACTATCAAACCTGAAAAGAGTGGCCGAAGGAGCCGAAGAGGAGGAAGTACTCTAGTAAAGCATAATCACAGACTGATAACTCTAGTTTACAATCTGCAAACAACATAGCCTAGTTTGTCTTGTCATATCTCTTCACCACAGACCAGGAAAAAAAAGAAAGAAAAAAAAAACATGGACACAAAATGTTCAAAGCTGGGTTTCACCTTGTACATCTTCCTCACTTTGGGTGGGTGCGCAACTGTAGGATATGGTATATGGTTACAAATGAAGAGCAACACACCTGACTTGTTAAAAACAGTTGATGATGCAACACTTACAACGCTCCTGTCCCTGGGGGACCCGATGCTGATCACTCTGGGCTGCATCCTCGCTGTGATGGGCGGGATTGGCAGTTTAGGCATTTTGAAGAATAAACGCTGGATGCTCTTGGTTAAAGAAAAACCCTTCAGGAGCTTAGAGAGCAAACTGTTACAAACCATTGAGAAGAACTATAAAGTTGACTCTTCAATCACTAGCATATGGGATGAAACCATGAACAAGCTGCATTGCTGTGGATACAAAGGCTATGATGACTTCACACATTCCGCTTGGGTACAGTCGAACTCGTATCCCGAACAATGCTGCGGTGAATATACAAATACAAATTCTGTTTGTAGTAAAAAACAAGCTGAGAAAAAGGAAGTAAACGGCTGCATTCATGTCCTGTTGAGCGAAAAAAGTTTTCCCATTTCTGGAGCTTTGTTCTTTTTGATCGGGATTCTAGAGATTGTTGCCTTGGTCGGTTCCCTGACAGTCTACCGATGCTTGAGACGCATACCTAATCTCCCCAACCCCTTTGAAAATAATCTGTGATAAACAACTTTTTATAAATGTGTGCAAGTTATTTGTGTTTTATTATTAATTTTGCATTTATTTACAGTGCCTTCAGAGTAAAAAAAATCACATTTTGATTATGAAAGATGATGTGTGAAAAAAATATTTTTCTTAAAAATATTACTTGATTTCAGTTTTATAATGTCTATCAAATATAACAAAGTGCATAGTGGCTTCTCATTTTATTTACTGTTTCTTCTTTTTTTTTGTAAAGACAAATCACTTACAATATGATTCTATTATTATAAAGAACAGCTGTTAACCTTTAATAATTTCCTTTAACAATGATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185798 lncRNA downstream 7616 8359522 ~ 8359736 (-) True G163541
TU185797 lncRNA downstream 10226 8356894 ~ 8357126 (-) True G163540
TU185791 lncRNA downstream 22094 8345049 ~ 8345258 (-) True CI01000030_08335819_08343892
TU185780 lncRNA downstream 56220 8310901 ~ 8311132 (-) True G163528
TU185772 lncRNA downstream 82870 8284251 ~ 8284482 (-) True G163520
TU185801 lncRNA upstream 24118 8405000 ~ 8405234 (-) True G163544
TU185806 lncRNA upstream 43748 8424630 ~ 8424891 (-) True G163549
TU185657 lncRNA upstream 49070 8429952 ~ 8432173 (-) True G163409
TU185651 lncRNA upstream 82895 8463777 ~ 8466289 (-) True G163403
TU185810 lncRNA upstream 102523 8483405 ~ 8513971 (-) True G163552
CI01000030_08350086_08366927.mRNA mRNA downstream 273 8349698 ~ 8367079 (-) True CI01000030_08350086_08366927
CI01000030_08335819_08343892.mRNA mRNA downstream 21454 8335563 ~ 8345898 (-) False CI01000030_08335819_08343892
CI01000030_08328834_08331465.mRNA mRNA downstream 35812 8328102 ~ 8331540 (-) True CI01000030_08328834_08331465
CI01000030_08232550_08241049.mRNA mRNA downstream 126303 8232101 ~ 8241049 (-) True CI01000030_08232550_08241049
CI01000030_08201019_08203601.mRNA mRNA downstream 163707 8200166 ~ 8203645 (-) True CI01000030_08201019_08203601
CI01000030_08393024_08396689.mRNA mRNA upstream 11107 8391989 ~ 8396748 (-) True CI01000030_08393024_08396689
CI01000030_08399321_08402641.mRNA mRNA upstream 18281 8399163 ~ 8402924 (-) True CI01000030_08399321_08402641
CI01000030_08440613_08441821.mRNA mRNA upstream 59662 8440544 ~ 8441836 (-) True CI01000030_08440613_08441821
CI01000030_08450632_08457703.mRNA mRNA upstream 69294 8450176 ~ 8457975 (-) True CI01000030_08450632_08457703
CI01000030_08467514_08479103.mRNA mRNA upstream 86591 8467473 ~ 8479252 (-) True CI01000030_08467514_08479103
TU185749 other downstream 174866 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 574970 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 629348 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1217208 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1441695 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 552531 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 906324 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 1094306 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1734633 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1904847 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile