RNA id: CI01000030_08467514_08479103.mRNA


Basic Information

Item Value
RNA id CI01000030_08467514_08479103.mRNA
length 2443
RNA type mRNA
GC content 0.41
exon number 11
gene id CI01000030_08467514_08479103
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8467473 ~ 8479252 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAGAGCACAGACAGAGAACAAACACCACGAAAACCAGTTTGATTTTGATATAGTAATCTAGACTTGAGAATTAGCTGAACTGTTTAATCAGGAAGTCGCTCTTCTGTGTCTGAAGTGACTCTCGGCTGGACGTTTGTTTCTGTCACGATGTCCTCTCATCTGTGCGCTCTGATCCTGTTTGTCCTGAGTGGTGTGTTTGGTGATACAGATGAAGTGAAGTCAGTGTCAGTGATGGAGGGAGATTCTGTCACTCTAAACACTGATCTTACTGAAATACAGAGAGATGATCATATACTGTGGATGTTTGGACCTCGAGAGACTCGAATAGCTGAAATATATAAGCAGATCATTGAAATGTTTGGCAGTAAAAAGATATTTGGAGACAGACTCCAGATGGACAGTCAAACTGGATCTCTGACCATCAGAAACATCAGGTCTGAACACACTGGACTTTATAAACTACAGATCCGCAGCGACAGAGGGAACTCTGACAAGATATTCAATGTTACTGTCTACGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGATCAACAATCCCATCAGCAACCAGACTCAACATCTGGACATCACTCAACTCTGTCGGTCATGTTCAGATTTTAAGTTGACACAGCAGCAACTTCAGTCAAATACGGTGAAAATACCGTATTCGACCAGCTCACCAACAGTAAACGGTGTGTCTGGAGTTTATACAGATAAAACAACAGAGACGATATCAGTGATGGAGGGAGATTCTGTCACTCTTAACACTGATGTTACTGAAATACTGAGAGATGATCAGATACTGTGGACTTTTAGACTTCACAATTCAGAGACTCGTATAGCTGAAATCTATAAACAGATCATCTCTATATATCATTATAAAGAGAACAATGAGAGATTCAGAGACAGACTACAGATAGATGAGCAGACAGGATCTCTGACCTTCACAAACATCAACAAATTACACTCTGGACTTTATAAAGTACTGATCATTATTGGAGTGGTCAAAGAGAAGACTTTCAATATTGCTGTCTATGCTCCTCTACCTGTTCCTGTCATCAGTGATTCTCCACAAAACCCTTCAGCATCAGAAAGATCATCAGGTCAGAAATGTTCATTAGTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCTTCAGTCTCTCTCTGCCTCTGGAGATTCAGTGTCTGGATGATTCCTACAGCTGTGTGGTGTCCTATTCATTCACCAACCAGACTAAACATCTCAACATCACTGATCTTTGTCGGACATGTTCAGAAATGACAGAGAATTCATTAAATTTCATGCACATTATAACAGTAGTTTGTGTGCCGCTGCTGCTCATTTCTGCATGTGTGTTTTACTGCTGCTGCAGGAAATACAGCCAAGAAAAACCAGAGGGCAAATCAGAAAAGCATGTCAGAATACACAGAGATCATCTACCGTCTTCAGATCTGACACCGCTGATCATCTCATCATTCAACACTGACTTCACCAAAAACATCATGCAGTTTAACAAGAGAGATGATCAGATACTGTGGATGTTTGGACCTCGAGAGACTCGTATAGCTCAAATCTATAAGCAGGACATTGATATGTCTGACAGTAAAAAGATATTTGGAGACAGACTCCAGATGAACAGTCAAACTGGATCTCTGACCATCAGAAACATCAGATCTGAACACACTGGACTTTATAAACTACAGATCATCAGTCAAACAGGAACTTCATACAAGAGATTCAATGTTACTGTCTACGCTCCTCTTCCCATTCCTGTCATCACCAGTAACTCTTCAAACTGTTCATCATCATCATCATCAAGATCATCAGTGTCCAGATGTTCACTGCTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAACAACACCTACAGCTGTGTGATCAACAATCCCATCAGCAACCAGACTCAACATCTGGACAACATCACTCAACTCTGTCACACATGTGCAGGTGTAAAAGTATTTCTAGACAACTTAAAAGAGGGCGAAGTGCTTTGTGTAACCACAATAACAAAAAAAGGTCTTCTTCCGAGAGGCCCATATCTATGTTTAACTTATCTTGCAGTACTCGCTACATCACTTATGACTTATGACACTTGTACTTCACTTCTCTCCTGAGATCTCATCCGTATGTTTTTTGTATTTGCTTCACTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185651 lncRNA downstream 1184 8463777 ~ 8466289 (-) True G163403
TU185657 lncRNA downstream 35300 8429952 ~ 8432173 (-) True G163409
TU185806 lncRNA downstream 42582 8424630 ~ 8424891 (-) True G163549
TU185801 lncRNA downstream 62239 8405000 ~ 8405234 (-) True G163544
TU185800 lncRNA downstream 92410 8374785 ~ 8375063 (-) True G163543
TU185810 lncRNA upstream 4153 8483405 ~ 8513971 (-) True G163552
TU185812 lncRNA upstream 24752 8504004 ~ 8516535 (-) True G163554
TU185824 lncRNA upstream 132669 8611921 ~ 8612120 (-) True G163565
TU185826 lncRNA upstream 139930 8619182 ~ 8619400 (-) True G163567
TU185827 lncRNA upstream 140364 8619616 ~ 8621931 (-) True G163568
CI01000030_08450632_08457703.mRNA mRNA downstream 9498 8450176 ~ 8457975 (-) True CI01000030_08450632_08457703
CI01000030_08440613_08441821.mRNA mRNA downstream 25637 8440544 ~ 8441836 (-) True CI01000030_08440613_08441821
CI01000030_08399321_08402641.mRNA mRNA downstream 64549 8399163 ~ 8402924 (-) True CI01000030_08399321_08402641
CI01000030_08393024_08396689.mRNA mRNA downstream 70725 8391989 ~ 8396748 (-) True CI01000030_08393024_08396689
CI01000030_08367669_08379327.mRNA mRNA downstream 86591 8367352 ~ 8380882 (-) True CI01000030_08367669_08379327
CI01000030_08479752_08485957.mRNA mRNA upstream 399 8479651 ~ 8487329 (-) True CI01000030_08479752_08485957
CI01000030_08492487_08494184.mRNA mRNA upstream 13050 8492302 ~ 8494331 (-) True CI01000030_08492487_08494184
CI01000030_08498082_08533503.mRNA mRNA upstream 18575 8497827 ~ 8534156 (-) True CI01000030_08498082_08533503
CI01000030_08543066_08553404.mRNA mRNA upstream 63533 8542785 ~ 8553914 (-) True CI01000030_08543066_08553404
CI01000030_08561763_08584396.mRNA mRNA upstream 82511 8561763 ~ 8584396 (-) True CI01000030_08561763_08584396
TU185749 other downstream 274987 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 675091 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 729469 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1317329 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1541816 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 454161 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 807954 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 995936 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1636263 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1806477 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040181 False 2703 lncRNA 0.38 7 NC_007133.7 9782954 ~ 9791367 (+)