RNA id: CI01000030_08498082_08533503.mRNA


Basic Information

Item Value
RNA id CI01000030_08498082_08533503.mRNA
length 4145
RNA type mRNA
GC content 0.41
exon number 17
gene id CI01000030_08498082_08533503
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8497827 ~ 8534156 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATAGCATACATATCCAGGCCTCATCTGGGCCAACTGTGGCACATATGGCTCAGTTCTGGCAGCGAGAAAGGTCATAGGGGCCGTATCTGACCCACACACATCAAGCCGGTTTTAGTGTGAGTTGTAACTTGCTGTGTATGGCCCAGATGTGGCCCATGTGACCTTTGCCACTGCCAGAACTGAGCCATATGTGCCATAGTTGGCCCAGATGAGACCAGGAAATGTATGCAATTGCCAGCCACACTCAGGTTGAGTTATCGGCATCATGCCATGCGGTATGTAGGCCAGAAGAATGTGGTAGATGTGGGCCACAACTAGGCCAGATGTTATTTGCTATATGGCTTGCAATAGTAATAGTACACTAATAGTGATAGTAATTATAACAGAAGACCTTTCATTGTTGTTTTTGAAAGTTGCTCAGAACAAGAAGTGGTTACTTTAGTTTCAGTTGCAGTGGGTGTGTGATGATGACCTGATATTAAACCTTCAGTCTGATAATACTCTGCAAGTCAGCGACTGTTTAGGACCTCAATGGTTCTGATCTTGTGGTCATTTTCAGTGGAAACCTTCTCAAAACAGTGAGAAGGTTATCAGATATATATTTTTGTGCTCTGCTGAAGCTACTAAACTCTACTAGTCAGTTTTTCAAAAATGTTCCTGTGGAGCTTGTTGACTTGTTTTATATGTGTTCATGATGTCGAAGAAGATGGAATAAAGATAATATCGGCGATGGAGGGAGATTCTGTCACTCTACGCAGTGATGTTACTTACATTCAGAGAAATGATCGCATAACGTGGAAGTATGGACCTGATGAATCACATATTGCTGAAGTCTCTAAACACAGCATTTCTACGTATGCTGGTGATGATGGGAGATTCAGAGACCGACTGAAGCTGCATCCGACTGGATCTCTGACCATCACAAACATCAGATTCAGTGACTCCGGATATTATACAGTGACAATCGGCAGCTCCAGAAGAACCTTGCGGGAGATATTCTTGGTTATTGTCTATGCACATGTCACATCACCTGTCATTACTACAATCGCAGAAATCGAAGCGAGTCAAACTCCAAGTGATCAAGGTGTGTTGGGCACTGATATGGATGAAATGAAGTCAGTGACTGAAGGAGATTCAGTCTCTTTAAACACTAATTTTACTGAAGTACTGAAAAATGATCAGATACGGTGGATGTTTGGACCTCGTGAGACTAGCATAGCTGAAATCTATAATCAGAACATCTATATGTTTAAGAGTAATAAGATATTTGGAGACAGACTCCGGATGGAGAATCAAACTGGATCTCTGACCATCAGAAACATCAGATCCGAACACTCTGGACTTTATGAAGTACATGTCTGGAGAAGCAGACAGATCTTCCTCAAGAGATTCAATGTTACTGTCTATGCTCATCTTCCCCTTCCTGTCATCACCAGTAACTCTTCAATCTGTTCATCATCATCATCAGGATCATCAGTGTCCAATTGTTCACTGCTGTGTTCAGTGTTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAATGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAACAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGGCCAACATCAGTGAACTCTGTCAAGCCTGTTTGGTTATGTCAATGCATGACTCTGTCCAGTGTTGTAGTTTTACTGAAGCTGTGATTCGATTGGTCCTCTCTGCTCTGATGTTTGGTCTGGTTGCTGATGGGATTGTTGATCACACAGCTGTAGGTGTTTTTATCCTGATATTCCACCTCCAGAGAGTATCTTCTCTTCTGCATGTGCTGATTTCTCTCTCAGCTGTGTTTATGGTGATTTGTGCTGTGATGTTTCATCTGCACAAAAAGGACAGGACGAGAGGGCTCTGTCCAGTGTTGTGGTTTCTGATTGGTTGTGTGCTCTCGTGGGTGTGGCTGCTGAGAGACCTTTTTTTTTTCAGTTATGTTACGTTTTATGCTTCCAGTCAGTTTGGGATATTAACGAATATGGTGGTTCATGCGTTTTTCTGTTTTTGTCTATGGCTTTTGGGTGGTGTGTCTGGAGTTTATACAGATGAAACAGAGATGAAATCAGTGATAGAGGGAGATTCTGTCACTCTAAACACTGATGTTACTGAAATACTGAGAAAGCATCTAATAGTGTGGACATTTAGACTCAACAGTTCAGAGACCCGTTTAGCTCAAATCTCTGAACAGATCAATTCTGTGTATGATAGTGAGAATGAGAGATTCAGAGACAGACTACAGATAGATAACCAGACAGGATCTCTGACCATCACAAACATCAGCAAATTAGACTCTGGACTTTATAAACTACTGATCATGAATGAAGACGTCAAACACAAGAGTTTTAATATTTCTGTCTATGGTATTCTGACTGTTCCTGTCATTATCAGACACTCTTTACAAAATTCTTCATCATCATCAGGATCATCCAGATGTTCACTGCTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCCCATCAGAAACCAGACTCAACATCTGGACATCAGTGAACTTTGTCAGCCAAATTCAGCTCCTCTACCTGTTCCTGTCATCATGAGTGATTCTCCACAAAACCCTTCAGTATCAGAAAGATCATCAAAGCAGAATTGTTCACTGCTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGATTCAGTGTCTGGATGATTTATACAGCTGTGTGGTGTCTTATTCATTCACCAACCAGACTAAACACCTCAACATCACTGATCTCTATCAGACATGGTCAGAACTTTTTGTTTTCAGTTATGTTACGTTTTATGCTTCCAGTCAGTTTGGGATATTAACGAATATGGTGGTTCATGCGTTTTTCTGTTTTTGTCTATGGCTTTTGGGTGGCGTGTCTGGAGTTCATACAGATGAAACAGAAACAATATCAGTGATGGAGGGAGATTCTGTCACTCTAAACACTGATGTTACTGAATTACAGACACATCGTCTGATAATGTGGACATTTAGACTCAACAGTTCAGAGACTGTTATAGCTGAAATCTATAAACAGACCATCTCTGTATATGATAGTGAGAATGCTAAGAGATTCAGAGACAGACTACAGATAGATGAGCAGACAGGATCTCTGACCATCACAAACATCAACAAATCACACTCTGGACTTTATAAAGTACTGATCAGGAAAGAAGACGTCAAACACAAGAGTTTCAATATTGCTGTCTATGGTATTCTGACTGTTCCTGTCATTATCAGACACTCTTTGCAAAATTCTTCATCATCATCAGGATCATCCAGATGTTTACTGCTGTGTTCAGCTGTAAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGTTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGGACAACATCAATCAACATTGTCAGCCACATTCAGTTGTGTTTGGTGATACAGATAAAGTGACGTCAGTTCTGTCACTCTACCCAGCCAACAATTTGATCTCACCATGAGCTCCCAGTATACTCATGATGAGGTCACAGTGAGCTAAAAGTGTAACCTCACAGCGCACTCACTGTGTGCTCATACTGTGAGCTCATGTGAGACCGCTGTGAAATCATTGTGTTAAACTCTCATTCTGTTCGTTTAGTGTGAGTTCACTGTGATCTAAAATTTCTCTAATATCGGTCAGTTATATTACAAACATCATGTATAAGTTCATATTTTTAATGTACATTTAGTCAGACTAATCAGCTGATCACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185651 lncRNA downstream 31538 8463777 ~ 8466289 (-) True G163403
TU185657 lncRNA downstream 65654 8429952 ~ 8432173 (-) True G163409
TU185806 lncRNA downstream 72936 8424630 ~ 8424891 (-) True G163549
TU185801 lncRNA downstream 92593 8405000 ~ 8405234 (-) True G163544
TU185800 lncRNA downstream 122764 8374785 ~ 8375063 (-) True G163543
TU185824 lncRNA upstream 77765 8611921 ~ 8612120 (-) True G163565
TU185826 lncRNA upstream 85026 8619182 ~ 8619400 (-) True G163567
TU185827 lncRNA upstream 85460 8619616 ~ 8621931 (-) True G163568
TU185837 lncRNA upstream 116097 8650253 ~ 8650577 (-) True G163575
TU185638 lncRNA upstream 143859 8678015 ~ 8691569 (-) True G163390
CI01000030_08492487_08494184.mRNA mRNA downstream 3496 8492302 ~ 8494331 (-) True CI01000030_08492487_08494184
CI01000030_08479752_08485957.mRNA mRNA downstream 10498 8479651 ~ 8487329 (-) True CI01000030_08479752_08485957
CI01000030_08467514_08479103.mRNA mRNA downstream 18575 8467473 ~ 8479252 (-) True CI01000030_08467514_08479103
CI01000030_08450632_08457703.mRNA mRNA downstream 39852 8450176 ~ 8457975 (-) True CI01000030_08450632_08457703
CI01000030_08440613_08441821.mRNA mRNA downstream 55991 8440544 ~ 8441836 (-) True CI01000030_08440613_08441821
CI01000030_08543066_08553404.mRNA mRNA upstream 8629 8542785 ~ 8553914 (-) True CI01000030_08543066_08553404
CI01000030_08561763_08584396.mRNA mRNA upstream 27607 8561763 ~ 8584396 (-) True CI01000030_08561763_08584396
CI01000030_08597072_08624990.mRNA mRNA upstream 62800 8596956 ~ 8625419 (-) True CI01000030_08597072_08624990
CI01000030_08638306_08669065.mRNA mRNA upstream 103462 8637618 ~ 8669065 (-) True CI01000030_08638306_08669065
CI01000030_08671133_08672774.mRNA mRNA upstream 136936 8671092 ~ 8672774 (-) True CI01000030_08671133_08672774
TU185749 other downstream 305341 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 705445 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 759823 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1347683 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1572170 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 399257 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 753050 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 941032 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1581359 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1751573 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040177 True 1525 mRNA 0.35 6 NC_007133.7 9751117 ~ 9755111 (+)