CI01000030_08561763_08584396 (CACNA2D2, CACNA2D2B)


Basic Information

Item Value
gene id CI01000030_08561763_08584396
gene name CACNA2D2, CACNA2D2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8561763 ~ 8584396 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_08561763_08584396.mRNA
ATCTACAGTGAGAAGAGAAGACAGTTCAGTTTGGTCAGAAACAACCCTCGAGACATTGTAGAAAAAGTAGCAACTGACATTGAGAGACTGCTGGCCAAGAAACGCAAAGCACTCGAGAAACTGGCGAGTGAAGCAGAGCGTCTTCAGAAAGATCATCGCTGGCAGGATGGAATCAAGGAGGAAAATATTGAATATTATAACTCTAAAGCAGAGATGGACTATGTGAGTACTGAGTACATCTCTATCTATCGCCGATGTGAAAAACATGATGGTGAGGACATCGATTCTCAGATGTCGCTGAAACTGGAGTTCGTGTATGACCCGATCTTTAAGAATCATGTGAATTTCTCACACACTGCCGTCCAGATCCCCACAGACATCTACAAAGGCGCTCCAGTAATTCTGAATGAGCTGAACTGGACACAAGCATTAGAGCGAGTCTTCATGGAGAACAGCAGAGATGACCCGTCGTTACTCTGGCAAGCATTTGGAAGTGCCACGGGGGTCACAAGATATTACCCAGGTACATTCAAGGAGCGTCATCGCCGAAAGACATGGTCATCCTGGAGCGGCAGCGTCAGTGGACTCACTCTCAAACTCATCAAAGCTTCAGTCACAGAGATGCTCGACACGCTCTCTGACGACGATTATGTCAATGTGGCTAGGTTCAATGAGAAGGCCGAGGCAGTGGTGCCCTGCTTTAAGCACCTGGTACAGGCAAATGTACGCAATAAAAAGATCTTTAAAGAGGCAGTACAGCAGATGCAGGCCAAAGGAACCACCGATTACAAATCCGGCTTTCACTTCGCCTTCAACCAGCTGCTCAACAAGACAAATGTTCCTCGAGCCAACTGCAATAAAATCATCATGTTATTTACTGACGGAGGGGAGGACCGAGCTCAGGACATCTTTGAGCAGTATAACTGGCCCAATAAGACGGTCCGTGTGTTCACGTTCTCGGTGGGGCAGCACAATTATGATGTCACTCCACTGCAGTGGATCGCATGTGCTAATAAGGGATACTATTTTGAGATCCGCTCCATCTGTGCTATAAGGATTAACACCCAGGAGTATCTGGACGTACTGGGCCGCCCCATGGTTCTGGCAGGCAGAAGTGCCAAACAGGTGCAATGGACCAACGTCTATCAGGATGCTCTGGGTCTGGGGCTGGTGGTGACGGGGACGATGCCAGTCTTCAACCTCACCGTAGACGGAAACTCTCAGAATCAGCTGATTTTAGGGGTGATGGGGGTCGACGTTCATCTGGATGAGCTGAAGAGACTCACACCACAGTACAAGCTGGGAGCAAATGGATACATCTTCGCCATTGACCCAAATGGATACGTGCTCATGCATCCGAACCTGCAGCCTCGAGAGGAGGATTTGCCAGAGCCGGTGACACTGGACTTCCTGGACGCAGAAGTAGAAGACAGCAGCAAACAGGAGATTCGTCGGCAAATGATTGATGGCCGATCAGGAGAGATGACGATCAAAACACTAATTAAATCAATGGATGAGGCAAGTCGCTACATTGATGAGGTCATACGCATGTACTCCTGGACACCAATTAACGACACTGATTACAGTCTGGGTCTGGTGCTTCCTCCGTACAGTGAATATTACATCCAGGCTGATCTCAGTGATGTCATGCTACAGCTGCAGTATTTACAGTCTCTGCTGCCGAACTCTTTTGAGTCTGCCGGTCACGTGTTTCTGGCCCCCAGAGAATACTGCAAGCGTCTGCAGATGGCTGAGAATAACACACAGTTCCTGGCGGACTTCCTCTCTCTGATGGTGGAGATCTCACCTGAATCTGAAGACTGTGATCAGGGTCTCATTCATAACCTGATCTTGGATTCTGGGATCCTCTGGCAGCTTGCCACACGCGTTTGGCAGAACAAGGACCTCAACACGTACGGCTTCCTGGCGCTGTTCGCATCCACCAATGGAGGCGTCACACGCGTTTACCCCAACATGGCTGCTGAATCATGGGACGAGGATCCCGAGCCTCTGAACTCAAACTTCTTCCGTCGCAGTCTGGACAACAAAGGCTACATCTTTAGAGCACCAACACGAACCTCAATGGATGATCTGTTAATCTCAGAGAACGGCACTGTGGGGATTCTGGTCACCACCGCTGTGGAGGTCGTGATTGGAGGCAAAACCATGAAGCCTGCTGTGGTTGGCGTTAAGCTGGATTTAGAGGCCTGGGTTGACAAGTTCAAGATCCTCGCCAGCAACGTATCAGACAGCAGACAGGCAGCACATAAGTGCGGCCCATCCAGATCCTGTGAGATGGACTGTGAAGTGAACAGTGATGATTTGCTGTGTTACCTGATTGATGATGGCGGTTTCCTAGTGATGTCCAATCAGAGAGATCACTGGAAAAAGGTGGGACTGTTTTTTGGCGAGGTCGACCCCTACCTGATGTTCGCCCTCTATAACAACTCAATCTACGCACGCCATCAGACTTTCCAGTATCAGTCGGCCTGCGAGCCGACGGCCAGCAGCCACACGGGAGCCGCGCACAGAGGATTCTACGTGCCCTCCATTGCTGATTTTCTCAGTCTGGCCTGGTGGACGTCAGCAGCGGCATGGTCTGTTCTCCAGCAGTTCCTGTATGGACTTATCTACAGCAGCTGGTTCACCACAGTAGACGCCTGGGCTGAGAGTTCAGACACTAAAGGGAGCAGCAGCTGCGTGACGGTTCACAGTCAGTTCTACTTCACCAACACCACCAACTCCTTCAACGTGCTGCAGGACTGTGGGAACTGCTCCAGGTTGTTCCATGCCAAGCGTATAGAAAACACAAACCTGCTGTTTGTGGTGGCTGAGACGCTGCCTTGCAGCTCTTGCGAGATCGAGAAACTCCTACCTGTCAGAACAAAGAGAACACGTCTGAGTGTGGGAGCGCTCATTCTTTACACTGTCCAATGGGAGCTCTGCTCTGGATTCAGTTATTGTCACTTTACCTCATTCTACGATCATAATCTGAGTCCCACTGCCTTTGGTGTTCCTGTCCCTCATCCGTACGACGCTCCGGTCCTCTCCTGA

Function

symbol description
cacna2d2b Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D2 (calcium voltage-gated channel auxiliary subunit alpha2delta 2).
cacna2d2 Predicted to enable voltage-gated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to act upstream of or within several processes, including neuromuscular junction development; positive regulation of organ growth; and rhythmic synaptic transmission. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated calcium channel complex.

GO: NA

KEGG:

id description
K04859 CACNA2D2; voltage-dependent calcium channel alpha-2/delta-2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_08561763_08584396.mRNA True 3054 mRNA 0.50 34 8561763 8584396

Neighbor

gene id symbol gene type direction distance location
CI01000030_08543066_08553404 STRIP1 coding downstream 7849 8542785 ~ 8553914 (-)
CI01000030_08498082_08533503 NA coding downstream 27607 8497827 ~ 8534156 (-)
CI01000030_08492487_08494184 NA coding downstream 67432 8492302 ~ 8494331 (-)
CI01000030_08479752_08485957 NA coding downstream 74434 8479651 ~ 8487329 (-)
CI01000030_08467514_08479103 NA coding downstream 82511 8467473 ~ 8479252 (-)
CI01000030_08597072_08624990 NA coding upstream 12560 8596956 ~ 8625419 (-)
CI01000030_08638306_08669065 NA coding upstream 53222 8637618 ~ 8669065 (-)
CI01000030_08671133_08672774 NA coding upstream 86696 8671092 ~ 8672774 (-)
CI01000030_08704610_08727738 NA coding upstream 120136 8704532 ~ 8727754 (-)
CI01000030_08729507_08739473 NA coding upstream 144297 8728693 ~ 8739515 (-)
G163554 NA non-coding downstream 45228 8504004 ~ 8516535 (-)
G163552 NA non-coding downstream 47792 8483405 ~ 8513971 (-)
G163403 NA non-coding downstream 95474 8463777 ~ 8466289 (-)
G163409 NA non-coding downstream 129590 8429952 ~ 8432173 (-)
G163549 NA non-coding downstream 136872 8424630 ~ 8424891 (-)
G163565 NA non-coding upstream 27525 8611921 ~ 8612120 (-)
G163567 NA non-coding upstream 34786 8619182 ~ 8619400 (-)
G163568 NA non-coding upstream 35220 8619616 ~ 8621931 (-)
G163575 NA non-coding upstream 65857 8650253 ~ 8650577 (-)
G163390 NA non-coding upstream 93619 8678015 ~ 8691569 (-)
CI01000030_08185866_08194632 NA other downstream 369277 8184897 ~ 8197266 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other downstream 769381 7788797 ~ 7792198 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other downstream 823759 7735436 ~ 7737720 (-)
G163139 NA other downstream 1411619 7149474 ~ 7150144 (-)
G163065 NA other downstream 1636106 6924483 ~ 6925657 (-)
G163873 NA other upstream 349017 8933413 ~ 8933982 (-)
CI01000030_09277337_09294501 NA other upstream 702810 9276431 ~ 9294802 (-)
G164071 NA other upstream 890792 9475188 ~ 9476264 (-)
CI01000030_10103451_10131419 NA other upstream 1531119 10102944 ~ 10133765 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020199 cacna2d2b coding NC_007133.7 CM002906.2 9472814 ~ 9513061 (+)