XLOC_020199 (cacna2d2b)


Basic Information

Item Value
gene id XLOC_020199
gene name cacna2d2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9472814 ~ 9513061 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040173
ATTATGCACTGGGCTCGACGCATTGAACAGGAGATCGACAGAGTTTTGCAGCATATTAGTGGCGCTCAGCAACTGAAGGGGATCTACTTGGAAAAGAAAAAGCACTTCAGTCTGGTCAGAAACAACCCTCGAGACATTGTAGAGAAAGTAGCGACTGACATCGAGAGACTGCTTGCCAAGAAACGCAAAGCGCTGGAGAGACTGGCGAGTGAAGCGGAGCGTCTTCAGAAAGAGCATCGCTGGCAGGATGGAATCAAGGACGGTGAGGACATTGACTCTCAGATGTCCTTGAAACTGGATTTTGTGTACGACCCAAGCTTCAAAAACCAAGTGAATTACTCGCACACTGCCGTCCAGATCCCCACAGACATCTACAAAGGCGctCCAGTGATTCTGAATGAGCTGAACTGGACGCAGGCGCTAGAGCGAGTCTTCATTGAGAACAGCAGAGATGATCCCTCATTGCTTTGGCAAGCATTTGGTAGTGCCACCGGTGTCACCAGATATTACCCAGcTGCTCCCTGGAGAGCGCCAGATAAGATCGACCTTTATGATGTACGACGAAGACCCTGGTACATTCAAGGAGCGTCGTCACCCAAAGACATGGTCATTCTTGTAGACGTGAGCGGCAGCGTCAGCGGGCTCACATTAAAACTGATCAAAGCTTCGGTCACAGAAATGCTCGACACACTCTCCGATGATGATTATGTCAACGTGGCCAGGTTTAATGAGAAGGCAGAGGCAGTGGTGCCCTGTTTCGATCACCTGGTTCAGGCCAATGTGCGCAATAAGAAGATCTTCAAAGAGGCTGTGCAGCAGATGCAGGCCAAAGGGACCACCGATTACAAATCCGGCTTCCATTTCGCCTTCAACCAGCTCCTGAACAAGACAAACGTTCCTCGAGCCAACTGTAATAAAATCATCATGTTGTTCACTGACGGCGGAGAGGACCGAGCGCAGGACATCTTCGAGCAGTACAACTGGCCTAATAAGACGGTCCGCGTGTTCACGTTCTCGGTGGGGCAGCACAATTACGATGTCACTCCGCTGCAGTGGATTGCATGCTCTAATAAGGGATACTATTTTGAGATCCGCTCCATCTGTGCTATAAGGATTAACACCCAGgaatatctgGATGTATTGGGTCGCCCGATGGTTCTGGCAGGCAGAATCGCCAAACAAGTACAGTGGACAAACGTCTATCAGGACGCCCTGGGTCTGGGTCTGGTGGTGACAGGGACAATGCCGGTGTTCAACCTTACTGTGAACGGGGACTCTCAGaatCAGCTGATTTTAGGTGTGATGGGGGTCGACGTTCATCTGGACGAGCTGAAGAGACTCACACCACAGTACAAGCTCGGAGCCAATGGATACATCTTCGCCATTGACCCGAACGGATACGTGCTGATGCATCCAAACCTGCAGCCTCGAGAAGAGGATTTACCGGAGCAGGTGACTCTGGACTTTCTGGATGCAGAAGTGGAAGACAGCAGCAAACAGGAGATTCGCCGGCAGATGATTGACGGCCGATCGGGAGATATGACCATTAAAACTCTAATTAAATCAATGGACgaggcaagtcGCTACATTGACGACGTCACCCGGATGTACACCTGGACGCCCATCAACGACACAGACTACAGTCTAGGTTTGGTACTGCCTCCGTACAGTGAACATTACATCCAAGCTGATCTGAGTGATGTCATGCTCCAGCTGCAGTATTTACAGTCTCTGCTGCCCAACTCTTTCGAGTCTGCCGGTCATGTGTTTCTCGCTCCCAGAGATTATTGCAGGCGCCTGCACATCTCTGAAAACAACACACAGTTCCTGGTGGACTTCCTGTCTCTGATGGTGGAGATCTCACCGGAGTCTGAAGACTGTGATCAGGGTCTCATTCATAACCTGATCTTGGACTCCGGGATCCTCTGGCAGCTCGCCACACGCGTTTGGCAGAATAAAGACCTGGGCACGTATGGCTTTCTGGCTCTGTTTGCGTCCACCAATGGAGGCGTCACACGTGTTTACCCCAACATGGCGGCTGAATCATGGGATGAAGATCCTGAACCACTAAACTCAAACTTCTACCGGCGCAGTCTGGATaacaaaggctacatcttcagaGCGCCGACACGAACCTCGATGGATGATCTGCTGATCTCAGAGAATGGCACTGTGGGGATTCTGGTTACCACCGCCGTAGAGGTTGCATTTGGGAGCAAAACCATGAAGCCTGCAGTGGTCGGCGTTAAGCTGGATTTGGAGGCTTGGGTCGACAAGTTCAAGATCTTGGCCAGCAACGTGTCCGACAGCAGACAGGCCGCACATAAGTGCGGCCCGTCCAGATCCTGTGAGATGGACTGTGAAGTGAACAGCGATGATTTGCTGTGCTATCTGATCGATGATGGCGGTTTCCTGGTGATGTCCAATCAGAGAGATCACTGGAAGAAGGTTGGGCTGTTTTTCGGTGAGGTCGACCCGTACCTGATGTTCGCCCTCTACAACAACTCAATCTACTCCCGTCATCAGACCTTCCAGTATCAGTCGGCCTGCGAACCCACAGCCAGCAGCCACACAGGAGCCGCACACAGAGGATTCTACGTGCCCTCCATAGCGGACTTTCTCAGCCTAGCCTGGTGGACGTCTGCAGCCGCGTGGTCTATTTTGCAGCAGTTCTTGTATGGAGTCATGTACAGCAGCTGGTTCACCACAGCAGACGTCTGGGCTGAGAGTGCAGACAGTAAAGGGAGCAGCAGCTGTGTGACGGTTTACAGCCAGTTCTACTTCACCAACACCACCAACTCCTTCAACGTCCTGCAGGACTGCGGCAACTGCTCCAGCATTCTAACCACAAACTCTCTTTCTGTCAGGTTGTTCCATGCCAAGCGTATAGAAAACACAAACCTTTTGTTTGTGGTGGCTGAGACACTGCCCTGCAGCTCCTGCGAGATCGAGAAACTCCTGCCTGTCAGAACCAAGTCTCAAGAAGAAAACCCATGTGATGTCTTAAACTCGGCCCGCTATAGGAAAGGACCTGACAAATGCTTCGACTACAACTCAGAGGAGAACACATCACAGTGTGGCAGCGCTCACTCTTTACACTGTCCGCTGCCAGCTCTGCTCTTGGTTCAGTTATTTTTGATTTACCTCATTCTACGATCGTAATCCCACTGCCTTCGGTGTTCCTGTTCCCCATCCGTACCATGTTCTGGTCCGCTCCTGACATCCTCCTGGTTTTCCGGCTCTCTGTCTCATCGTGAGGTGCATTCCAGCTGTGTGCCGTTACAGCAGAGCATGATGGGAAACGTGTCTTAGTAccccccccctcaaaaaaaaaaaactgtcttaaatagtttcatatttatatttgggaAAAACATGATGAGAATCTTTCTGCTGCCGTGAAGTGTTTTTTGCTTGCCAAATCCAAAAACAGGAAAGGACCtggcgtgttttttttttttttttttccaaaatactGAAACAGAAATTTTAACTGTTGTTATCACAATCTCGCATTGTGTTAGAGTCTTGCTTTGTTCTGGATTTAGTGCCAAACCCTGATGTTTGTGGATGTCCAAATGCTGGGGATGCGCAAGTTCTGTTCAAGTATTTCGTTCGAGGTTTTCCTGCCAAAA
>TCONS_00040174
CACTGGGCTCGACGCATTGAACAGGAGATCGACAGAGTTTTGCAGCATATTAGTGGCGCTCAGCAACTGAAGGGGATCTACTTGGAAAAGAAAAAGCACTTCAGTCTGGTCAGAAACAACCCTCGAGACATTGTAGAGAAAGTAGCGACTGACATCGAGAGACTGCTTGCCAAGAAACGCAAAGCGCTGGAGAGACTGGCGAGTGAAGCGGAGCGTCTTCAGAAAGAGCATCGCTGGCAGGATGGAATCAAGGAGGAAAATATTGAGTATTATAACTCTAAAGCAGAGATGGATTATGACGGTGAGGACATTGACTCTCAGATGTCCTTGAAACTGGATTTTGTGTACGACCCAAGCTTCAAAAACCAAGTGAATTACTCGCACACTGCCGTCCAGATCCCCACAGACATCTACAAAGGCGctCCAGTGATTCTGAATGAGCTGAACTGGACGCAGGCGCTAGAGCGAGTCTTCATTGAGAACAGCAGAGATGATCCCTCATTGCTTTGGCAAGCATTTGGTAGTGCCACCGGTGTCACCAGATATTACCCAGcTGCTCCCTGGAGAGCGCCAGATAAGATCGACCTTTATGATGTACGACGAAGACCCTGGTACATTCAAGGAGCGTCGTCACCCAAAGACATGGTCATTCTTGTAGACGTGAGCGGCAGCGTCAGCGGGCTCACATTAAAACTGATCAAAGCTTCGGTCACAGAAATGCTCGACACACTCTCCGATGATGATTATGTCAACGTGGCCAGGTTTAATGAGAAGGCAGAGGCAGTGGTGCCCTGTTTCGATCACCTGGTTCAGGCCAATGTGCGCAATAAGAAGATCTTCAAAGAGGCTGTGCAGCAGATGCAGGCCAAAGGGACCACCGATTACAAATCCGGCTTCCATTTCGCCTTCAACCAGCTCCTGAACAAGACAAACGTTCCTCGAGCCAACTGTAATAAAATCATCATGTTGTTCACTGACGGCGGAGAGGACCGAGCGCAGGACATCTTCGAGCAGTACAACTGGCCTAATAAGACGGTCCGCGTGTTCACGTTCTCGGTGGGGCAGCACAATTACGATGTCACTCCGCTGCAGTGGATTGCATGCTCTAATAAGGGATACTATTTTGAGATCCGCTCCATCTGTGCTATAAGGATTAACACCCAGgaatatctgGATGTATTGGGTCGCCCGATGGTTCTGGCAGGCAGAATCGCCAAACAAGTACAGTGGACAAACGTCTATCAGGACGCCCTGGGTCTGGGTCTGGTGGTGACAGGGACAATGCCGGTGTTCAACCTTACTGTGAACGGGGACTCTCAGaatCAGCTGATTTTAGGTGTGATGGGGGTCGACGTTCATCTGGACGAGCTGAAGAGACTCACACCACAGTACAAGCTCGGAGCCAATGGATACATCTTCGCCATTGACCCGAACGGATACGTGCTGATGCATCCAAACCTGCAGCCTCGAGAAGAGGATTTACCGGAGCAGGTGACTCTGGACTTTCTGGATGCAGAAGTGGAAGACAGCAGCAAACAGGAGATTCGCCGGCAGATGATTGACGGCCGATCGGGAGATATGACCATTAAAACTCTAATTAAATCAATGGACgaggcaagtcGCTACATTGACGACGTCACCCGGATGTACACCTGGACGCCCATCAACGACACAGACTACAGTCTAGGTTTGGTACTGCCTCCGTACAGTGAACATTACATCCAAGCTGATCTGAGTGATGTCATGCTCCAGCTGCAGTATTTACAGTCTCTGCTGCCCAACTCTTTCGAGTCTGCCGGTCATGTGTTTCTCGCTCCCAGAGATTATTGCAGGCGCCTGCACATCTCTGAAAACAACACACAGTTCCTGGTGGACTTCCTGTCTCTGATGGTGGAGATCTCACCGGAGTCTGAAGACTGTGATCAGGGTCTCATTCATAACCTGATCTTGGACTCCGGGATCCTCTGGCAGCTCGCCACACGCGTTTGGCAGAATAAAGACCTGGGCACGTATGGCTTTCTGGCTCTGTTTGCGTCCACCAATGGAGGCGTCACACGTGTTTACCCCAACATGGCGGCTGAATCATGGGATGAAGATCCTGAACCACTAAACTCAAACTTCTACCGGCGCAGTCTGGATaacaaaggctacatcttcagaGCGCCGACACGAACCTCGATGGATGATCTGCTGATCTCAGAGAATGGCACTGTGGGGATTCTGGTTACCACCGCCGTAGAGGTTGCATTTGGGAGCAAAACCATGAAGCCTGCAGTGGTCGGCGTTAAGCTGGATTTGGAGGCTTGGGTCGACAAGTTCAAGATCTTGGCCAGCAACGTGTCCGACAGCAGACAGGCCGCACATAAGTGCGGCCCGTCCAGATCCTGTGAGATGGACTGTGAAGTGAACAGCGATGATTTGCTGTGCTATCTGATCGATGATGGCGGTTTCCTGGTGATGTCCAATCAGAGAGATCACTGGAAGAAGGTTGGGCTGTTTTTCGGTGAGGTCGACCCGTACCTGATGTTCGCCCTCTACAACAACTCAATCTACTCCCGTCATCAGACCTTCCAGTATCAGTCGGCCTGCGAACCCACAGCCAGCAGCCACACAGGAGCCGCACACAGAGGATTCTACGTGCCCTCCATAGCGGACTTTCTCAGCCTAGCCTGGTGGACGTCTGCAGCCGCGTGGTCTATTTTGCAGCAGTTCTTGTATGGAGTCATGTACAGCAGCTGGTTCACCACAGCAGACGTCTGGGCTGAGAGTGCAGACAGTAAAGGGAGCAGCAGCTGTGTGACGGTTTACAGCCAGTTCTACTTCACCAACACCACCAACTCCTTCAACGTCCTGCAGGACTGCGGCAACTGCTCCAGGTTGTTCCATGCCAAGCGTATAGAAAACACAAACCTTTTGTTTGTGGTGGCTGAGACACTGCCCTGCAGCTCCTGCGAGATCGAGAAACTCCTGCCTGTCAGAACCAAGTCTCAAGAAGAAAACCCATGTGATGTCTTAAACTCGGCCCGCTATAGGAAAGGACCTGACAAATGCTTCGACTACAACTCAGAGGAGAACACATCACAGTGTGGCAGCGCTCACTCTTTACACTGTCCGCTGCCAGCTCTGCTCTTGGTTCAGTTATTTTTGATTTACCTCATTCTACGATCGTAATCCCACTGCCTTCGGTGTTCCTGTTCCCCATCCGTACCATGTTCTGGTCCGCTCCTGACATCCTCCTGGTTTTCCGGCTCTCTGTCTCATCGTGAGGTGCATTCCAGCTGTGTGCCGTTACAGCAGAGCATGATGGGAAACGTGTCTTAGTAccccccccctcaaaaaaaaaaaactgtcttaaatagtttcatatttatatttgggaAAAACATGATGAGAATCTTTCTGCTGCCGTGAAGTGTTTTTTGCTTGCCAAATCCAAAAACAGGAAAGGACCtggcgtgttttttttttttttttttccaaaatactGAAACAGAAATTTTAACTGTTGTTATCACAATCTCGCATTGTGTTAGAGTCTTGCTTTGTTCTGGATTTAGTGCCAAACCCTGATGTTTGTGGATGTCCAAATGCTGGGGATGCGCAAGTTCTGTTCAAGTATTTCGTTCGAGGTTTTCCTGCCAAAA

Function

symbol description
cacna2d2b Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D2 (calcium voltage-gated channel auxiliary subunit alpha2delta 2).

GO:

id name namespace
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-99 Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D2 (calcium voltage-gated channel auxiliary subunit alpha2delta 2).

Ensembl:

ensembl_id ENSDARG00000078169

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040173 False 3635 mRNA 0.50 36 9472814 9513061
TCONS_00040174 True 3644 mRNA 0.50 37 9472820 9513061

Neighbor

gene id symbol gene type direction distance location
XLOC_020198 si:ch211-11p18.6 coding upstream 13788 9389801 ~ 9459026 (+)
XLOC_020197 NA coding upstream 89330 9359899 ~ 9383484 (+)
XLOC_020196 BX927329.2 coding upstream 113411 9351372 ~ 9359403 (+)
XLOC_020195 NA coding upstream 129814 9341455 ~ 9343000 (+)
XLOC_020194 NA coding upstream 148997 9322757 ~ 9323817 (+)
XLOC_020200 strip1 coding downstream 9910 9522971 ~ 9538071 (+)
XLOC_020201 BX664625.1 coding downstream 238056 9751117 ~ 9755111 (+)
XLOC_020202 BX664625.6 coding downstream 248869 9761930 ~ 9763971 (+)
XLOC_020203 BX664625.5 coding downstream 251670 9764731 ~ 9768550 (+)
XLOC_020204 BX664625.2 coding downstream 259693 9772754 ~ 9775634 (+)
XLOC_020189 NA non-coding upstream 406396 9066086 ~ 9066418 (+)
XLOC_020205 NA non-coding downstream 269893 9782954 ~ 9791367 (+)
XLOC_020211 NA non-coding downstream 373684 9886745 ~ 9904498 (+)
XLOC_020212 NA non-coding downstream 384910 9897971 ~ 9904623 (+)
XLOC_020216 NA non-coding downstream 476844 9989905 ~ 9991494 (+)
XLOC_020219 NA non-coding downstream 505839 10018900 ~ 10049233 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_08561763_08584396 CACNA2D2, CACNA2D2B coding CI01000030 null 8561763 ~ 8584396 (-)