RNA id: CI01000030_08492487_08494184.mRNA


Basic Information

Item Value
RNA id CI01000030_08492487_08494184.mRNA
length 944
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000030_08492487_08494184
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8492302 ~ 8494331 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGAGCGAGACGGGGAACACAGACCACTAAAACCAACTTGCTTTTGGTTTAGCAATCTAGATTTGAGGAACAGCTGCCTTTTTAAATCAGGAAGTCACTCTTCTGTGTCTGAAGTGACTCTCGGCTGGACGTTTGTTTCTGTCACGATGTCCTCTCATCTGTGCGCTCTGATCCTGTTTGTCCTGAGCGATGAAGTGAAGTTAGTGTCAATGAGAGAGGGACAATATGTCACTCTAAACACTGATGTTACTGAAGTACAGAGAGATGATCAGATAGTGTGGTTTTTTGGACCTCAAGAGACTCGTATAGCTGAAATATATAACCAGAACATTGATATAAATAAGAGTGATGAGCTATTTGGACACAGACTCCAGATGGACAGTCAAACTGGATCTCTGACCATCATGGACATCGGGACTGCACACACTGGACTTTATAAACTACAGATCATCAGCATCAGAGGAACTTCATACAAGAGATTCAATGTTATTGTTTATTTGTTTAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCTTCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCCCATCAGAAACCAGACCAAACATCTCACATCCAAGGAACTCTGTCACACATTTGCAAATCAGAAAAGCATGTCAGAATACACAGAGATCATCTACCGTCTTCAGATCTGACACCACTGATCATCACTCATGATCCCCACGTCTCATGATTTTACATCCAATATAACCGATTCATTTTATTCATGATGAAGCTTCATGTACATCTGCTTCCAGAGATCAAGCTAAACTGGATCACAACATGAATTGTTATTACAGATAATTTTTCATTCACAGTTTGATGAAATTGTATCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185651 lncRNA downstream 26013 8463777 ~ 8466289 (-) True G163403
TU185657 lncRNA downstream 60129 8429952 ~ 8432173 (-) True G163409
TU185806 lncRNA downstream 67411 8424630 ~ 8424891 (-) True G163549
TU185801 lncRNA downstream 87068 8405000 ~ 8405234 (-) True G163544
TU185800 lncRNA downstream 117239 8374785 ~ 8375063 (-) True G163543
TU185812 lncRNA upstream 9673 8504004 ~ 8516535 (-) True G163554
TU185824 lncRNA upstream 117590 8611921 ~ 8612120 (-) True G163565
TU185826 lncRNA upstream 124851 8619182 ~ 8619400 (-) True G163567
TU185827 lncRNA upstream 125285 8619616 ~ 8621931 (-) True G163568
TU185837 lncRNA upstream 155922 8650253 ~ 8650577 (-) True G163575
CI01000030_08479752_08485957.mRNA mRNA downstream 4973 8479651 ~ 8487329 (-) True CI01000030_08479752_08485957
CI01000030_08467514_08479103.mRNA mRNA downstream 13050 8467473 ~ 8479252 (-) True CI01000030_08467514_08479103
CI01000030_08450632_08457703.mRNA mRNA downstream 34327 8450176 ~ 8457975 (-) True CI01000030_08450632_08457703
CI01000030_08440613_08441821.mRNA mRNA downstream 50466 8440544 ~ 8441836 (-) True CI01000030_08440613_08441821
CI01000030_08399321_08402641.mRNA mRNA downstream 89378 8399163 ~ 8402924 (-) True CI01000030_08399321_08402641
CI01000030_08498082_08533503.mRNA mRNA upstream 3496 8497827 ~ 8534156 (-) True CI01000030_08498082_08533503
CI01000030_08543066_08553404.mRNA mRNA upstream 48454 8542785 ~ 8553914 (-) True CI01000030_08543066_08553404
CI01000030_08561763_08584396.mRNA mRNA upstream 67432 8561763 ~ 8584396 (-) True CI01000030_08561763_08584396
CI01000030_08597072_08624990.mRNA mRNA upstream 102625 8596956 ~ 8625419 (-) True CI01000030_08597072_08624990
CI01000030_08638306_08669065.mRNA mRNA upstream 143287 8637618 ~ 8669065 (-) True CI01000030_08638306_08669065
TU185749 other downstream 299816 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 699920 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 754298 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1342158 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1566645 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 439082 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 792875 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 980857 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1621184 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1791398 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile