RNA id: CI01000030_08543066_08553404.mRNA


Basic Information

Item Value
RNA id CI01000030_08543066_08553404.mRNA
length 3236
RNA type mRNA
GC content 0.48
exon number 21
gene id CI01000030_08543066_08553404
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8542785 ~ 8553914 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAACCCTTAACAGGAGTAAAATATTCATTTCTCATCGTACAAACTCTTCATAATTATCTTTAATAGCTTCCTGCTACACTTTGCAATGAATGTAGGCTACACCTACGTTGAACGGCTCTGGGCTACACTATATTCATACTTAATTTTTGTGTTGAGTGTTATATTCATTGCGTGTTATTTACCGTGTGTCAGTTGTCCTGTCAGTAGCCTGTTCATCTCAACTGTCTAACTGAATATGGCTGGAATGACAAACTAAAATAAACGAAATTATTTTTGTGAGCACCGATTTTTTCGCACATCAAATGTTTTACATTGAAGGAATGTCCTGCAACCCGAAATATTATGAAAAGTATCTGCGTGAATAAAACATGCTTAACTAATTATAATTATATTAACTAAAATCTGAGTCTGAAACATCACGTCAGTGGCCGCTTACGCCACAGGCTGTAACATCGCGAGATGTATGCAAGTAGCGCGAGAGGTGAGCGGCAGCAGGAAGTGCGGTGAAGATGGAGGGTGTCGGATTAAGTGCTAACAACAAACAGAAACAAAATCAAATGCTGCCGAATAAAATGCGAGGCGAGTTCACCAGAAATCAGAGGAAAGACTCTGAGGGATTATCGGAAGCTCCCGATTTGGAGTTTGAATATTCAGATTCCGATAAATGGACAATCGAACTGTCAGAGTTGTACAGTTACACAGAGGGACCAGAGTTTCTACTCAACAGAAAGTGTTTCGAAGAAGATTTCCACACTCATATGCCCGATCAGAAATGGACCGAACTGGATTTGGTTCAGCACAGAGCTCATGCCATGCGTCTGCTGGACGGACTGGACGTGATCGGCCGAGAACGCCGATTAAAAGTTGCCAGAGCCATCTTGTACATGGCTCAAGGTACATTTGGTGAGTGTTCTTCAGAACTGGAGGTGCAGCACTGGATGAGGTATAACGTCTTCCTGCTGCTGGATGTGGGAGCGTTCACTGCGCTAGTGGAGCTGCTCAACATGGAGATTGATAACAGTGCTGCGTGCAGCAGTGCGGTCAGGAAACCCGCCATCTCACTGGCCGACAGCACTGACCTCAGGGTGTTGCTGAACATCATGTATCTGATGGTGGAGACCATCCAGCGTGAAGAAGCCACAGACAGTCCAGAGTGGAGAACCATTAGAGAAACCTTCAAATCTGAACTAGGTTCTCCTCTCTATAACCACGAGCCCGTCTCCGTCATGCTGTTCGGGATGGTGACCAAGTTCTGCAGTGGCCACGCGCCCCATTTCCCCATGAAGAAAGTCCTGCTGCTGCTCTGGAAGACCATCCTGTTCACTCTGGGAGGGTTTGAGCAGCTGCAGTGCTGTAAGGTCAGTAAACGGGTGGCGTTGGGTCTCCCGCCGCTGCCAGAGGACAGTATCCGTGTGGTGCGGAGCATGAGAGCTGCGTCCCCGCCGGCGTCCGCCTCTGACCTGATTGAGCAACAACAGAGACGTGCCCGGAGAGAACACAAGGCTCTTATAAAGCAGGACAATCTGGACGCGTTTAACGAGAAGGACCCATATAAAGCCGATGACACCCGTGAGGACGAAGAGGAAAACGACGACAATGACAACTCTCTAGAGTCGGAGCCTTTCCCGCTGGAGCGCGATGAGGTCATGCCGCCACCCATCCCGCACCCCCCCTCTGAGAGGGTCTGTTTTCCCAAGGGTCTGCCGTGGGCTCCGAAAGTCAGGGAAAAGGATATTGAGAACTTCCTGGAGTCCAGCAGGAGTAAATTCATCGGTTACACGCTGGGAAATGACACGGATACAGTGGTCGGTTTGCCCAGACCCATACACGAAAGCATCAGAACTCTCAAACAGCACAAGTATGTGTCCATCGCTGAGGTCCAGATCGCTAAAGAAGAGGAGTATCAGAAGACCCCTCTGTCTGGCGGTGAGGAAGAGCTGGAGTTGTGTGCCACAGAGCTCTTGTACCAGGGTATTTTACCCAGTTTACCACAGTATATGATCGCACTGCTCAAGATCCTGTTGGCTGCTGCTCCCACATCCAAAGCTAAGACCGACTCAATCAACATCCTGGCAGACGTGCTGCCCGAGGAAATGCCCACTACGGTTCTTCAGAGTATGAAGTTGGGCGTAGATGTGAATCGCCATAAAGAAATCATCGTCAAAGCCATTTCAGCCATACTGCTGCTGCTACTGAAACACTTCAAACTCAACCATGTCTATCAGTTTGAGTACATGGCGCAGCATCTGGTGTTTGCCAACTGCATCCCGCTGATCCTGAAGTTCTTCAACCAGAACATTATGTCCTACATCACTGCTAAAAACAGTATCTCGGCTCTGGATTTCCCGCACTGCGTCATTCACGAGCTTCCGGAGCTCACCGCTGAGAGTCTGGAAGCTGGTGATAATAATCAGTTCTGCTGGAGGAACTTGTTCTCCTGTATTAATCTGTTGCGCATCCTCAATAAACTCACCAAATGGAAGCACTCCAGGACCATGATGTTGGTGGTGTTCAAATCGGCTCCAATCCTGAAGAGGGCGCTGAAGGTTAAGCAGGCCATGATGCAGCTCTATGTTCTCAAGCTGCTCAAAGTCCAGACGAAGTATCTGGGGCGGCAATGGAGGAAGAGCAACATGAAAACCATGTCAGCGATATACCAGAAGGTGCGCCATCGCCTCAACGACGACTGGGCCTATGGAAACGCAGACCTGGACGCTCGCCCCTGGGACTTTCAGGCAGAAGAATGCGCCCTACGTGCCAACATTGAACGGTTCAACAGCCGACGCTATGACAAGACCCAGAGCAACCCGGAATTCCTCCCGGTGGACAACTGCCTGCAAAGTGTGCTTGGACAGCGGATCGACCTTCCAGAAGACTTCCAAATGAACTATGACCTCTGGCTGGAGCGTGAGGTCTTTTCCAAACCAATTTCCTGGGAAGAGCTCCTGCAGTGAATGCCTGTAATGCGTTTTAATGCAATTGTGAAAATGACCATTACCAGAGTAAAACTCTTCTAACAACACTACGCTTCATAGAGTTCAACAACAGGGACCATTTCCTGTGTGTCTGTTTGTGTAATATAACGGCTCGTCTGTAGTAAATCTGCATTTATTTTGTTTTGTTTTGTTTTTTACACTTAGAAAGGGAACTTTGTTAGCCAGAGGTGCTAAGAGGTCATTTTTATGTTTGTTTTTGCTGCTTTTGATTTATTGATTCTTTATAACTGAGTATTAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185812 lncRNA downstream 26250 8504004 ~ 8516535 (-) True G163554
TU185810 lncRNA downstream 28814 8483405 ~ 8513971 (-) True G163552
TU185651 lncRNA downstream 76496 8463777 ~ 8466289 (-) True G163403
TU185657 lncRNA downstream 110612 8429952 ~ 8432173 (-) True G163409
TU185806 lncRNA downstream 117894 8424630 ~ 8424891 (-) True G163549
TU185824 lncRNA upstream 58007 8611921 ~ 8612120 (-) True G163565
TU185826 lncRNA upstream 65268 8619182 ~ 8619400 (-) True G163567
TU185827 lncRNA upstream 65702 8619616 ~ 8621931 (-) True G163568
TU185837 lncRNA upstream 96339 8650253 ~ 8650577 (-) True G163575
TU185638 lncRNA upstream 124101 8678015 ~ 8691569 (-) True G163390
CI01000030_08498082_08533503.mRNA mRNA downstream 8629 8497827 ~ 8534156 (-) True CI01000030_08498082_08533503
CI01000030_08492487_08494184.mRNA mRNA downstream 48454 8492302 ~ 8494331 (-) True CI01000030_08492487_08494184
CI01000030_08479752_08485957.mRNA mRNA downstream 55456 8479651 ~ 8487329 (-) True CI01000030_08479752_08485957
CI01000030_08467514_08479103.mRNA mRNA downstream 63533 8467473 ~ 8479252 (-) True CI01000030_08467514_08479103
CI01000030_08450632_08457703.mRNA mRNA downstream 84810 8450176 ~ 8457975 (-) True CI01000030_08450632_08457703
CI01000030_08561763_08584396.mRNA mRNA upstream 7849 8561763 ~ 8584396 (-) True CI01000030_08561763_08584396
CI01000030_08597072_08624990.mRNA mRNA upstream 43042 8596956 ~ 8625419 (-) True CI01000030_08597072_08624990
CI01000030_08638306_08669065.mRNA mRNA upstream 83704 8637618 ~ 8669065 (-) True CI01000030_08638306_08669065
CI01000030_08671133_08672774.mRNA mRNA upstream 117178 8671092 ~ 8672774 (-) True CI01000030_08671133_08672774
CI01000030_08704610_08727738.mRNA mRNA upstream 150618 8704532 ~ 8727754 (-) True CI01000030_08704610_08727738
TU185749 other downstream 350299 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 750403 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 804781 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1392641 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1617128 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 379499 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 733292 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 921274 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1561601 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1731815 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040175 False 3320 mRNA 0.46 21 NC_007133.7 9522971 ~ 9538071 (+)
bowfin (Amia calva) AMCG00013979 True 2451 mRNA 0.61 21 CM030125.1 48745893 ~ 48754827 (-)