RNA id: TU185800


Basic Information

Item Value
RNA id TU185800
length 279
lncRNA type intronic
GC content 0.36
exon number 1
gene id G163543
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8374785 ~ 8375063 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATCTCAACAGCGGTGACTGTCAAAAAGCATGTTGCAATGCATTCTGGGAGCCACCAATCAAAATTCATCCACGGCTCCCATCATGCATTGCTGCATGAATAAATTATGAGCTTAATTGTCTTAGTAATTTTCTTTATTCTAACTATTTTATTTTTTGCTGTTTTTATGTGACTTTTTAGTAGCTTGTTTTCTAATGTTCAGAGTTGATCTGTTTATCAGAATATGTTGCTTGTCACCGTTGTTGAGATTCACAGGCTGATTCTTGATGTCTGTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185798 lncRNA downstream 15049 8359522 ~ 8359736 (-) True G163541
TU185797 lncRNA downstream 17659 8356894 ~ 8357126 (-) True G163540
TU185791 lncRNA downstream 29527 8345049 ~ 8345258 (-) True CI01000030_08335819_08343892
TU185780 lncRNA downstream 63653 8310901 ~ 8311132 (-) True G163528
TU185772 lncRNA downstream 90303 8284251 ~ 8284482 (-) True G163520
TU185801 lncRNA upstream 29937 8405000 ~ 8405234 (-) True G163544
TU185806 lncRNA upstream 49567 8424630 ~ 8424891 (-) True G163549
TU185657 lncRNA upstream 54889 8429952 ~ 8432173 (-) True G163409
TU185651 lncRNA upstream 88714 8463777 ~ 8466289 (-) True G163403
TU185810 lncRNA upstream 108342 8483405 ~ 8513971 (-) True G163552
CI01000030_08350086_08366927.mRNA mRNA downstream 7706 8349698 ~ 8367079 (-) True CI01000030_08350086_08366927
CI01000030_08335819_08343892.mRNA mRNA downstream 28887 8335563 ~ 8345898 (-) False CI01000030_08335819_08343892
CI01000030_08328834_08331465.mRNA mRNA downstream 43245 8328102 ~ 8331540 (-) True CI01000030_08328834_08331465
CI01000030_08232550_08241049.mRNA mRNA downstream 133736 8232101 ~ 8241049 (-) True CI01000030_08232550_08241049
CI01000030_08201019_08203601.mRNA mRNA downstream 171140 8200166 ~ 8203645 (-) True CI01000030_08201019_08203601
CI01000030_08393024_08396689.mRNA mRNA upstream 16926 8391989 ~ 8396748 (-) True CI01000030_08393024_08396689
CI01000030_08399321_08402641.mRNA mRNA upstream 24100 8399163 ~ 8402924 (-) True CI01000030_08399321_08402641
CI01000030_08440613_08441821.mRNA mRNA upstream 65481 8440544 ~ 8441836 (-) True CI01000030_08440613_08441821
CI01000030_08450632_08457703.mRNA mRNA upstream 75113 8450176 ~ 8457975 (-) True CI01000030_08450632_08457703
CI01000030_08467514_08479103.mRNA mRNA upstream 92410 8467473 ~ 8479252 (-) True CI01000030_08467514_08479103
TU185749 other downstream 182299 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 582403 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 636781 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1224641 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1449128 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 558350 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 912143 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 1100125 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1740452 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1910666 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile