RNA id: TU186057


Basic Information

Item Value
RNA id TU186057
length 151
lncRNA type read_through
GC content 0.42
exon number 1
gene id CI01000030_09899280_09916736
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9899085 ~ 9918906 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAACAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGGACATCACTCAACTCTGTCACACATGTGCAGTCTTTCTGATAGCGTTGATCTCTGCTGCTGCTGGATCTCTGTTGTTTGTAGCTGTCTTTGGGATCTTCTGCATCTGCAGAACATATAGAGAAACAGTTCAGACCCAGGAGGAAGACAAAACTGATTCAGCAGTGTGTAAACCAACAACACGAAAGAAGAAGTCAAAGACGGAGGCTGTGCTTGAAAATGCTCCCAAAAAACAGCGCCTATCCATGCGTTTTTCTTATTTTTAGGTCTTGGTTTTCAAGTGTTTGTTTCTTGAACAGATAAAAAATAAAATGTAATGTCCATATCTTTGAAAATAAAGTTGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186069 lncRNA downstream 41566 9726605 ~ 9847985 (-) True G163784
TU185969 lncRNA downstream 83670 9733712 ~ 9805881 (-) True G163684
TU186484 lncRNA downstream 90600 9775838 ~ 9798951 (-) True G164150
TU186485 lncRNA downstream 90866 9795704 ~ 9798685 (-) True G164151
TU186483 lncRNA downstream 133207 9755879 ~ 9756344 (-) True G164149
TU186503 lncRNA upstream 6957 9919610 ~ 9981402 (-) True G164167
TU186525 lncRNA upstream 113571 10026224 ~ 10026855 (-) True G164188
TU186082 lncRNA upstream 176369 10094923 ~ 10095627 (-) True G163797
TU186028 lncRNA upstream 194941 10107594 ~ 10403831 (-) True G163743
TU186098 lncRNA upstream 271371 10184024 ~ 10186590 (-) True G163813
CI01000030_09861443_09865523.mRNA mRNA downstream 23625 9860252 ~ 9865926 (-) True CI01000030_09861443_09865523
CI01000030_09857554_09858116.mRNA mRNA downstream 31299 9857318 ~ 9858252 (-) False CI01000030_09857554_09858116
CI01000030_09828173_09846949.mRNA mRNA downstream 42503 9828058 ~ 9847048 (-) True CI01000030_09828173_09846949
CI01000030_09819566_09824633.mRNA mRNA downstream 63105 9819202 ~ 9826446 (-) True CI01000030_09819566_09824633
CI01000030_09812332_09814520.mRNA mRNA downstream 74832 9812192 ~ 9814719 (-) True CI01000030_09812332_09814520
CI01000030_09931071_09932929.mRNA mRNA upstream 18179 9930832 ~ 9933859 (-) True CI01000030_09931071_09932929
CI01000030_09958143_09965122.mRNA mRNA upstream 45287 9957940 ~ 9965969 (-) True CI01000030_09958143_09965122
CI01000030_09974111_09976354.mRNA mRNA upstream 61375 9974028 ~ 9976652 (-) True CI01000030_09974111_09976354
CI01000030_09978185_09986181.mRNA mRNA upstream 65348 9978001 ~ 9986434 (-) True CI01000030_09978185_09986181
CI01000030_10016398_10019434.mRNA mRNA upstream 103556 10016209 ~ 10020016 (-) True CI01000030_10016398_10019434
TU186385 other downstream 413287 9475188 ~ 9476264 (-) True G164071
TU185995 other downstream 587402 9287206 ~ 9302149 (-) True G163710
TU186160 other downstream 955569 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 1697065 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 2097169 7792243 ~ 7792382 (-) True G163366
TU186002 other upstream 202862 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 373076 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 434707 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other upstream 452764 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274
TU186808 other upstream 1581685 11512598 ~ 11512682 (-) True G164443

Expression Profile