RNA id: TU186050


Basic Information

Item Value
RNA id TU186050
length 555
lncRNA type intronic
GC content 0.34
exon number 1
gene id G163765
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9333354 ~ 9333908 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAACAGAATCACTGAAGAAACAACAAGAGAAAAAGAGAGAGACACGACAACTACAACTGACTTCCAGCCATTAAACATTATTACACTTATTATTAACCAGTTTGATTTTATTTCTGTAATACATCAACAAAAGTTCTTACTGAGAATTAACAGATGTTTAGATGTTAATGTTTTAATGAAAGTTTAGTTTGAAGTCACCATGATGGTGAAAAGCATTTCCTTTAGTTGGGCTCTTGACTCTTTATTTATTAACATTATTCTTTCTCTGGCTGCTCCAACTTTGTGTTTGTAGAGCACATTTGTTATGGCCAGAGAAACTGTGATCTGGGCTGCATTTCCCAAAAGTGTTGTAAGCCAAAGTTGATCAATTTAGGTTTACGATGCTTTGGGAAGCACAGTTGTGTTTTGATGATGACATTCTCATTGTGAAATGGCCAGATTCGTTGGTGACATCCAGTATTGTTATATAGATGTTCTATTATTTCTTTACACTAAATCTGTTACTGCTTGAGATCCAGCAGAGTTTCTATAATCTTAAGTGTTTTTTGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186330 lncRNA downstream 4474 9328554 ~ 9328880 (-) True G164020
TU186328 lncRNA downstream 6292 9326696 ~ 9327062 (-) True G164018
TU186071 lncRNA downstream 7385 9325475 ~ 9325969 (-) True G163786
TU186324 lncRNA downstream 25160 9307819 ~ 9308194 (-) True G164014
TU186315 lncRNA downstream 48272 9284872 ~ 9285082 (-) True G164008
TU186332 lncRNA upstream 3493 9337401 ~ 9337610 (-) True G164022
TU186333 lncRNA upstream 5427 9339335 ~ 9340156 (-) True G164023
TU186334 lncRNA upstream 6409 9340317 ~ 9340518 (-) True G164024
TU186337 lncRNA upstream 10026 9343934 ~ 9344277 (-) True G164027
TU186063 lncRNA upstream 22627 9356535 ~ 9356972 (-) True G163778
CI01000030_09277337_09294501.mRNA mRNA downstream 38552 9276431 ~ 9294802 (-) False CI01000030_09277337_09294501
CI01000030_09253701_09256358.mRNA mRNA downstream 75564 9252115 ~ 9257790 (-) True CI01000030_09253701_09256358
CI01000030_09225959_09236989.mRNA mRNA downstream 94072 9225332 ~ 9239282 (-) False CI01000030_09225959_09236989
CI01000030_09176691_09178066.mRNA mRNA downstream 155288 9176645 ~ 9178066 (-) True CI01000030_09176691_09178066
CI01000030_09038299_09059689.mRNA mRNA downstream 273334 9038248 ~ 9060020 (-) True CI01000030_09038299_09059689
CI01000030_09382055_09418356.mRNA mRNA upstream 48076 9381984 ~ 9419047 (-) True CI01000030_09382055_09418356
CI01000030_09433282_09440636.mRNA mRNA upstream 99008 9432916 ~ 9441088 (-) True CI01000030_09433282_09440636
CI01000030_09448873_09453673.mRNA mRNA upstream 114864 9448772 ~ 9454092 (-) True CI01000030_09448873_09453673
CI01000030_09500443_09502785.mRNA mRNA upstream 166355 9500263 ~ 9502862 (-) True CI01000030_09500443_09502785
CI01000030_09561245_09573575.mRNA mRNA upstream 227254 9561162 ~ 9574107 (-) True CI01000030_09561245_09573575
TU185995 other downstream 31205 9287206 ~ 9302149 (-) True G163710
TU186160 other downstream 399372 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 1140868 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 1540972 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1595350 7737975 ~ 7738004 (-) True G163364
TU186385 other upstream 141280 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 781607 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 951821 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 1013452 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other upstream 1031509 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274

Expression Profile