RNA id: CI01000030_10443696_10457604.mRNA


Basic Information

Item Value
RNA id CI01000030_10443696_10457604.mRNA
length 679
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000030_10443696_10457604
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10443691 ~ 10457807 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTCTGACAGCTTGGGGGAAATGTTGATATGAGATATGTGATGTTACCAGTGTGGAGTGGGAGAGAGGTGTTGTGAGCTGTAGGGTCCCAAGCGTCTTCAGAGATATATTTTTAAATCTTGTACTGAATTCCATAAACCATCAATCCAAAACTGCATAAAAAATGAATCTGTAATGACACAGTAAGAGCAAAAATTTCAGGGATGAGAACTGACAGAATACCCAAAAGCCAAGGTGTGTTTGCTGATGAACTGAAGTCAGTGTCAGTGATGGAGGGAGAATCAGTCACTCTACAGACTAATGTTGATGAAATACAGACAGGTGATGAGATAGTGTGGACATTCGGAACTAACAGGAGTCTTATAGCTGAAACTGATGGAGTGACTATTAAGATTCCTGATTATCTTGATGAGAGATTCAGAGACAGACTGAAGCTGGACAAGAAGACTGGATCTCTGACCATCACAAACACCAGAACTGAACATGCTGGAGTTTATGAAGTGATCATCAGTGGCAGCAGCTCAGAGACTAAACACAGATTCAATGTTACTGTCAATGTTGAGAACCATGAAGATGACATCACTTATGCTAATCCAACATTCTACAAAAGAAATGTACAGACTGTTAAACAGGAAGATGAGGTGGTGTACGCAGCTGTTGTCAGCAGACGTTAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186032 lncRNA downstream 14434 10421858 ~ 10429257 (-) True G163747
TU185970 lncRNA downstream 17097 10423936 ~ 10426594 (-) True G163685
TU186028 lncRNA downstream 39860 10107594 ~ 10403831 (-) True G163743
TU186606 lncRNA downstream 59660 10367448 ~ 10384031 (-) True G164258
TU186060 lncRNA downstream 103361 10305266 ~ 10340330 (-) True G163775
TU186042 lncRNA upstream 48987 10506794 ~ 10509132 (-) True G163757
TU186636 lncRNA upstream 58641 10516448 ~ 10516680 (-) True G164284
TU186637 lncRNA upstream 59047 10516854 ~ 10517084 (-) True G164285
TU186641 lncRNA upstream 76708 10534515 ~ 10565796 (-) True G164289
TU185926 lncRNA upstream 168700 10626507 ~ 10629824 (-) True G163648
CI01000030_10398430_10417482.mRNA mRNA downstream 26004 10398125 ~ 10417687 (-) True CI01000030_10398430_10417482
CI01000030_10374567_10392087.mRNA mRNA downstream 49724 10373148 ~ 10393967 (-) False CI01000030_10374567_10392087
CI01000030_10343879_10366274.mRNA mRNA downstream 77183 10343865 ~ 10366508 (-) False CI01000030_10343879_10366274
CI01000030_10321881_10332415.mRNA mRNA downstream 110241 10321871 ~ 10333450 (-) True CI01000030_10321881_10332415
CI01000030_10313822_10320039.mRNA mRNA downstream 123598 10313723 ~ 10320093 (-) False CI01000030_10313822_10320039
CI01000030_10552198_10557500.mRNA mRNA upstream 94258 10552065 ~ 10557995 (-) True CI01000030_10552198_10557500
CI01000030_10577987_10580431.mRNA mRNA upstream 120137 10577944 ~ 10580726 (-) True CI01000030_10577987_10580431
CI01000030_10592588_10595113.mRNA mRNA upstream 133947 10591754 ~ 10595302 (-) True CI01000030_10592588_10595113
CI01000030_10635543_10640525.mRNA mRNA upstream 177610 10635417 ~ 10640608 (-) True CI01000030_10635543_10640525
CI01000030_10654923_10662255.mRNA mRNA upstream 197109 10654916 ~ 10663268 (-) True CI01000030_10654923_10662255
TU186031 other downstream 51512 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other downstream 77336 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274
TU186048 other downstream 123586 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186002 other downstream 321971 10121592 ~ 10121720 (-) True G163717
TU186385 other downstream 967427 9475188 ~ 9476264 (-) True G164071
TU186808 other upstream 1036531 11512598 ~ 11512682 (-) True G164443

Expression Profile