G163775


Basic Information

Item Value
gene id G163775
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10305266 ~ 10340330 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU186060
AAGTCTGAAGAGTCTTTATTATAGAGATAACATAGTTTTTCTCATGCAGAAGAATATGATATACAGTGTAAACAGTGACAGAGTCATTTCTGTTCTGGAAGTATTTGTCCCGTTCACTATGAATGGGAAATGAACGGGACTTTAACTTCCAGAACTGACTTCTAAATGTTGAGTAATATTATAGACATTACAATTATTTGAGGGAAGCTTAAAAAATCATTTCATCCTCTGAGGCCCGAATGTGCCTTATTCTGAACCAGTAACCACATTCACTAATCTTCATCTGACACACTGTATATTTAATAATATTGTATTTTTATTCTTGTTTAGTGTTATAATACCAAAGCAAAAGCAATAGAAAATTGTTGTTTCACCACACCATCATTACAAACATTTAAATGAAGAAAATATCCCTAGAAACCACAATAAAATATCCGTGATTTTAATCCTACAGTGAAAAACAGTAATTGGTTTACAGAAAGTTTTCGTAGATATACAGTGAATAACTGTAATAGATCTAGTGGTACTTTAGATACATAACATCAGGTACATTAAACCGTTAAATTTACAGTTTTTGGAAGTGAAAAATAACAAGTCATTGTATAATTTACAATAATAAAAAATAAAAAAAAGTAAATTGACATTCCCACAATTCTCCGTGTGACACTTCACATCTGATTTTCGTTGAAATAACTCTAATTATTCTTAGTTTTTTTTCTATTCAGTTATACAAATTAGGGTTCTATGTTACATCTAATGCTGTTAAATTAATGTTTATTGCATGTGTGTTACCATGATGGTGTTGGTGTGAATGACACTGTGTCTCCTTTACATTAGTATTGTTCTTCTCAGTTTGTAAAAAATCTGCTTGTGATGAGCTTTGATTCATCATATGACTCTCAAAATCACTGTATTTGCTGGTTGTCAGTGTATTAGAAAGGTACAGAACAGATATTAGTACTTCAATAGGTTGATAAAGTAACATTATATCAGTTAAATGTAAAAATGTTTTTTTACCATAAATTTAATGGATTTTTTTAAGTGCGTAAAATAAACAATTATAAACTGTAATTATTACAATATAAACCTTTACATTATATGGTTTTGAACTGTAAAATAGACAGTAAACTAAGTGCTGTCCTGTAAAATCTAAAACGTTGCTACCATATTTTTTACGGTAAAGTTCTGGAAACCACAGCTGCCATATTTTTACTGTGCACACAATCATCAGAGTAAACAGATATAGCAAGCATCGCAAAAAGTAAGAAAAATAAGGAGAAATAATTAACATTAAATAATTATATTATCAAAGAAAATTAAACAACACAGAAATCCGTCCTTCACAGGTGAAAAGTGCGGTAATGCTTTACAATAAGGTTCATTAGTTAACATTAACCAACTACACCAGTCTAAATCATGTGAAGAACATTTATTAGTGGTGTTACGTATGAAACAGGTTCTTCTGTAGGTTTATAAGTATGCAGAGCCATTTGAAATTAAAAGTCCAGAGGCTAATGGATCGTTTCTCAGAAAATCACGTGATCAACAGCAACCCGTGAGTTTCGTTTTCTGCTAAATCATCTGCGTGTGGGAACTTGTTTCCTAACTCTGATATCACCGCTGACTCACCTGAACAGGAGGAATATACAGGAACAGGTCACCCTTTAGAAAAATGTGCGTTCATAAATATGCTGTTGCCTAACACAGTTTAATCTGTTCAATCACTTGTGAATGGAAGCTTAATTTCTGCCAATGAATAATAAAAATAATAAATGTAATCTCAAAATTTTGTCTTTTTTTTTTTTTGCGTGATATAACTCGCAACTGAGTTATAAAGTAAGAATTCATCGAGTAACTTTATGCTGTGAATGTGTGTGATGATGCATTCGACATTTAACCAGCAGCTTAAGCCTACAACCACATATACATTTTCAATTCTACACGAATGCATTTGCAATAATCATCAATGCATATTTTGAAAATACAAAATCAAGTGACTTACCATCAACGAGAAAAACAAACAGAGTGAGCACAAAATAGCCTCCCATTTTTTTTATCTTTTTATTTTTTAAATCGTTGTTGAGCTGATAAATCAATTGAATCGAGTCTTGAATATTGTTGCCTTTGTATTCTGCAAAGCAGGAGTCCCCGGAGCTGTTTCAGAAATAGGCTACAGAGTAGCCTGTTTACATGATGGTGACGGTTGCGATGTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU186060 True 2215 lncRNA 0.32 2 10305266 10340330

Neighbor

gene id symbol gene type direction distance location
CI01000030_10297963_10300335 NA coding downstream 4607 10297456 ~ 10300659 (-)
CI01000030_10280046_10287211 NA coding downstream 18016 10279978 ~ 10287250 (-)
CI01000030_10227153_10232109 NA coding downstream 72630 10227074 ~ 10232636 (-)
CI01000030_10189939_10194778 NA coding downstream 110328 10189777 ~ 10194938 (-)
CI01000030_10172789_10173932 NA coding downstream 131270 10172737 ~ 10173996 (-)
CI01000030_10343879_10366274 NA coding upstream 3535 10343865 ~ 10366508 (-)
CI01000030_10374567_10392087 NA coding upstream 32818 10373148 ~ 10393967 (-)
CI01000030_10398430_10417482 NA coding upstream 57795 10398125 ~ 10417687 (-)
CI01000030_10443696_10457604 NA coding upstream 103361 10443691 ~ 10457807 (-)
CI01000030_10552198_10557500 NA coding upstream 211735 10552065 ~ 10557995 (-)
CI01000030_09857554_09858116 NA non-coding downstream 67533 9857318 ~ 9858252 (-)
G164232 NA non-coding downstream 80378 10222447 ~ 10224888 (-)
G164224 NA non-coding downstream 94457 10203655 ~ 10210809 (-)
G163739 NA non-coding downstream 102792 10200596 ~ 10202474 (-)
G164258 NA non-coding upstream 27118 10367448 ~ 10384031 (-)
G163747 NA non-coding upstream 81528 10421858 ~ 10429257 (-)
G163685 NA non-coding upstream 83606 10423936 ~ 10426594 (-)
G163757 NA non-coding upstream 166464 10506794 ~ 10509132 (-)
G164284 NA non-coding upstream 176118 10516448 ~ 10516680 (-)
CI01000030_10103451_10131419 NA other downstream 183546 10102944 ~ 10133765 (-)
G164071 NA other downstream 829002 9475188 ~ 9476264 (-)
CI01000030_09277337_09294501 NA other downstream 1003117 9276431 ~ 9294802 (-)
G163873 NA other downstream 1371284 8933413 ~ 8933982 (-)
CI01000030_08185866_08194632 NA other downstream 2112780 8184897 ~ 8197266 (-)
CI01000030_11494792_11495184 CTXN1 other upstream 1154008 11494183 ~ 11495854 (-)

Expression


Co-expression Network