G163747


Basic Information

Item Value
gene id G163747
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10421858 ~ 10429257 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU186032
TCAAAAACGGACTTACCGATCGCGAATAATGGGGAAAGAACAAGTATAAGTGCGCTCTTCATCTTGTTGTACAGTTGCGTGAAGAGATATGATCCTTGAAGTTATTACAGTCCTCTGATTGTTCATCAGAGATCCGTTTCTGAGCCGCACCCTCAGCCAGAGATATTATACGAGACGACTAACAGAGAGAAAACGAATTACATAGAGACTATTTACACTGAATAGCATTTATTTCATTTTCAAGAACCGCAAAAAAGCGCACTCCGGTAGTCCTGTATCTAAAATGGCCGAATCTTCCGCTTGTTTGAATCAGGCACATGCACATAGCGCCGCCTAGTGAATGGGCGATTTTGAAACAGGCAGCTCACTTGTTGCCTCGTTGCCCAATCATGCAATGACTTTACAGGCAGCGTTTGCGCCCGAAGGTACCTCACGAAACTCTGAGACTTCTGAGGCAACGTAACGGTTTAATCAACAGCAAAATAGCGCGAGCTTGGTGATAACTAAGCGAACGTTTAAGTAGCATAATAGTACTTTTTCGCTAGAAGTAACATCAAAAGTAGAAAACAATGGTCATAAATTTACACACAAACTGACCACCAACCGCAACTTTCAGACGCCATATTTAAGATTGTGGGATATCAAAGGCAGTGAAGAATACATCTATGCTGCCTTCAAAAATCGATCAGATGAAGGCATCTCATGAGACAGGAAGTGAAGCTAACTTCGGATTCAGACGTGCCTTAATGTCTTCCTACCTTGCATTTTCAGTTTCCGGATGCAGCCACTGCTTCATGAAGCTTCGAAACTTTTGGGAATCGTTTGTTTACATTCAGTGGTTCGGAGTGTGTAGGCTTGTCCGACTTCACACAGCCCTGCGCAGACCGATCAACATCAGACTTGAAGCAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU186032 True 910 lncRNA 0.43 2 10421858 10429257

Neighbor

gene id symbol gene type direction distance location
CI01000030_10398430_10417482 NA coding downstream 4171 10398125 ~ 10417687 (-)
CI01000030_10374567_10392087 NA coding downstream 27891 10373148 ~ 10393967 (-)
CI01000030_10343879_10366274 NA coding downstream 55350 10343865 ~ 10366508 (-)
CI01000030_10321881_10332415 NA coding downstream 88408 10321871 ~ 10333450 (-)
CI01000030_10313822_10320039 NA coding downstream 101765 10313723 ~ 10320105 (-)
CI01000030_10443696_10457604 NA coding upstream 14434 10443691 ~ 10457807 (-)
CI01000030_10552198_10557500 NA coding upstream 122808 10552065 ~ 10557995 (-)
CI01000030_10577987_10580431 NA coding upstream 148687 10577944 ~ 10580726 (-)
CI01000030_10592588_10595113 NA coding upstream 162497 10591754 ~ 10595302 (-)
CI01000030_10635543_10640525 NA coding upstream 206160 10635417 ~ 10640608 (-)
G163743 NA non-coding downstream 18027 10107594 ~ 10403831 (-)
G164258 NA non-coding downstream 37827 10367448 ~ 10384031 (-)
G163775 NA non-coding downstream 81528 10305266 ~ 10340330 (-)
G163697 NA non-coding downstream 104907 10315147 ~ 10316951 (-)
G163757 NA non-coding upstream 77537 10506794 ~ 10509132 (-)
G164284 NA non-coding upstream 87191 10516448 ~ 10516680 (-)
G164285 NA non-coding upstream 87597 10516854 ~ 10517084 (-)
G164289 NA non-coding upstream 105258 10534515 ~ 10565796 (-)
G163648 NA non-coding upstream 197250 10626507 ~ 10629824 (-)
CI01000030_10103451_10131419 NA other downstream 300138 10102944 ~ 10133765 (-)
G164071 NA other downstream 945594 9475188 ~ 9476264 (-)
CI01000030_11494792_11495184 CTXN1 other upstream 1065081 11494183 ~ 11495854 (-)

Expression


Co-expression Network