RNA id: CI01000030_10577987_10580431.mRNA


Basic Information

Item Value
RNA id CI01000030_10577987_10580431.mRNA
length 1124
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000030_10577987_10580431
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10577944 ~ 10580726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTATAGAATAAAATATTAAAAATATTTAATAGAATTTTCTTTAATGGTGAGATTAGAATCCGTTTTAACAGGGTATTCTTCTAATCATTTTTAAAAGTTACCTCCTTTTATCTTTGGGATATCTATTTTATAATGTGAGATGGGAAACTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACTAGGAGGGTCTTCAAACTGTTGTGGGAGGAGTCACACACACCCGATTAATAGTTCCGCTGAAATCAGTTTGTTTTAGCAGATAGTCTCACTGAACCGCTGAAGAAAATGTTTCACATGTTCGTTCTGTTCTGTTTGTGCTGGTGCCGTCTGACTGGTGTGTTTGGTGATTCAGTGTCAGTGATGGAGGGAGATTCTGTCACTCTAAACTCTGATGTTACTGAAATACATAAAGACGACGAGATACTGTGGAAATTTGGAGCTGAAAACTCTCTCATAGCTGAAATCATTGGTGGAAGCTTCTCCACATCTGTTGTTCCTGATGGGAGATTCAGAGACAGACTGAAGCTGGACGATCAAACTGGATCTCTGACCATCACAAACATCACAACTGAACATGCTGGAGTTTATCAACTAGAGATAAGGGGAGCGAAACTGTCATCAAACACATTCAATGTTTCTGTCTATGCTCGTCTGCCTGTTCCTGTCATCAGCAGAGACTGTTCATCATCATCATCATCAAATTGTTCATTGGTGTGTTCAGCTCTGAATGTGGGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAACAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCCACCAGACTCAACATCTGGACATCACTCAACTCTGTCACACATGTTCAGCCTCTGTCCACTGTTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGCTCTGGTGGGTGTGGCTACTGTCGCTGTTCTGCTTTATGACATCAGATCCACATCAGGTTTAAAGAAGAAAACAGAACAGATATCATAAATATTGTCATAACTTGGAGTTTTTAAATGTAAATATGAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186641 lncRNA downstream 12148 10534515 ~ 10565796 (-) True G164289
TU186637 lncRNA downstream 60860 10516854 ~ 10517084 (-) True G164285
TU186636 lncRNA downstream 61264 10516448 ~ 10516680 (-) True G164284
TU186042 lncRNA downstream 68812 10506794 ~ 10509132 (-) True G163757
TU186032 lncRNA downstream 148687 10421858 ~ 10429257 (-) True G163747
TU185926 lncRNA upstream 45781 10626507 ~ 10629824 (-) True G163648
TU185922 lncRNA upstream 89522 10670248 ~ 10672026 (-) True G163644
TU186687 lncRNA upstream 166383 10747109 ~ 10756128 (-) True G164333
TU186702 lncRNA upstream 205003 10785729 ~ 10786207 (-) True G164347
TU186703 lncRNA upstream 208034 10788760 ~ 10788980 (-) True G164348
CI01000030_10552198_10557500.mRNA mRNA downstream 19949 10552065 ~ 10557995 (-) True CI01000030_10552198_10557500
CI01000030_10443696_10457604.mRNA mRNA downstream 120137 10443691 ~ 10457807 (-) True CI01000030_10443696_10457604
CI01000030_10398430_10417482.mRNA mRNA downstream 160257 10398125 ~ 10417687 (-) True CI01000030_10398430_10417482
CI01000030_10374567_10392087.mRNA mRNA downstream 183977 10373148 ~ 10393967 (-) False CI01000030_10374567_10392087
CI01000030_10343879_10366274.mRNA mRNA downstream 211436 10343865 ~ 10366508 (-) False CI01000030_10343879_10366274
CI01000030_10592588_10595113.mRNA mRNA upstream 11028 10591754 ~ 10595302 (-) True CI01000030_10592588_10595113
CI01000030_10635543_10640525.mRNA mRNA upstream 54691 10635417 ~ 10640608 (-) True CI01000030_10635543_10640525
CI01000030_10654923_10662255.mRNA mRNA upstream 74190 10654916 ~ 10663268 (-) True CI01000030_10654923_10662255
CI01000030_10705288_10715416.mRNA mRNA upstream 124208 10704934 ~ 10715585 (-) True CI01000030_10705288_10715416
CI01000030_10732075_10737200.mRNA mRNA upstream 150623 10731349 ~ 10737535 (-) True CI01000030_10732075_10737200
TU186031 other downstream 185765 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other downstream 211589 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274
TU186048 other downstream 257839 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186002 other downstream 456224 10121592 ~ 10121720 (-) True G163717
TU186385 other downstream 1101680 9475188 ~ 9476264 (-) True G164071
TU186808 other upstream 913612 11512598 ~ 11512682 (-) True G164443

Expression Profile