RNA id: CI01000030_10705288_10715416.mRNA


Basic Information

Item Value
RNA id CI01000030_10705288_10715416.mRNA
length 2176
RNA type mRNA
GC content 0.43
exon number 13
gene id CI01000030_10705288_10715416
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10704934 ~ 10715585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTAACTACCTGTGCCTTTCTGCCAACAGTTAAATGCTGCATATAATAAAACATGTTTGCATCTCTTACATCACTGCGACCACAGCCGGTGTGTGCAGAGGTGTCACATCCTGTTAGGGGAGAATTCACATTCAGCGAATGGTCACTTATTGTGAACGGCTTAAAAAATGGTCCATGTGTTTGTTTTGTTCTATTTGTGCTGGTTGTGTCTTGTTGGCGTGTTTGGTGCGGAGACAGAGTCAGTGTCAGTGATGGAGGGAGATTCTGTCACTCTACACACTGACACCGAAATACAAAAAGACGATCTGATACTATGGAGATTTGGAACTGAAGACTCTCCTATGGCTGAAGTCAATAGTTCAGCCCAGATCATCTCTATATCTGGAAGTACTGAAGGATTCAAAGACCGATTGCATTTGGACCCCCAGACTGGATCTCTCACTGTCAGGAACATCAGAACCAACCACTCTGGAATTTATAAAGCACAGATCATTGGACATAAGGTGTCAACGAAAATGTTCAATGTCACTGTTTATGCTCATCTTCCTGTTCCTGTCATCACCAGAGACTGTTCATCATCATCATCATCATGTTCATTGGTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAATTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCAGCACCGTCTCTTTACATCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCTCATCAGCAACCAGACTCAACATCTGGACATCACTCAACTCTGTCAGATACGTTCAGACTCAGACTCTGACTGTATCTGCTGTTGTGATTCTACTAAAGCTGTGATCCAATTGGTCCTCTCTGCTCTGGTGCTCGTGCTCGCGGTGTTCGCCGCTATTCTATGCGGGTTTCCAGCATCATGCGCTCGTAATTTAAATTACAGACCAATCATCGGAATTTTAGCCCAGGAAAACCTAGAGGACGACCCTCATGCACAGGGATCTTCTTATATAGCTGCATCATATGTGAAACACTTGGAGTCAGCTGGTGCCAGGGTTGTACCAATCCGCATAAATCGCACAGAGGAGGAGTATGAAAAACTATTCAACGCAATAAATGGTTTGTTGCTACCTGGAGGGAATGTGGACATTGAAAAGTCTCAGTTTACCAGAGTGGCGAAGATTTTCTATGAACTTGCAATAAAGGCTAATGATGCTTCGGATTATTTTCCGATCTGGGGCACCTGCCAGGGCTTGCAGCAGCTCACGGTTCTGACCAGCAACAAGAACTTGTTGACCTTGACCGACACCAAAGCAGTCACCCTACCGTTGACCTTCAGCCCAGGAGCCCAAAACAGCAGGTTGTTCAAAAAATTTCCAAAGGATGTTCTTCAGTCTCTGGCAGAAGAAAACATCACGTCTAATTTCCACAGCTGGAGCTTGTCCATGCAGAATTACAGTGGCAATGCCAAGCTGAAGCGTTTTTATCGAGTCCTGACCACAAACACAGACGGCAGGAAAGAGTTCATTTCCACCATGGAGGCGTCTCGATATCCCTTCTACGCTGTGCAATGGCACCCAGAGAAAAGCCCGTTTGAGTGGATTGAGAAAGCTGGTATGGTGCACACCCCCTCAGCTATCAAAGCCAGTTTCTACACTGCCCACTTCTTTGTTTCTGAAGCAATGAAAAACCATCATCGTTTTTCTTCGCAAAGTGAGGAGGAAAAGGCTCTGATTTACAACTATCAGCCCGTCTTCAAAGGCCTGGACAGCATCTTCTTACAAAATTACTACTTCGATTAAGTGTTCAAGTCATTGCTCTTGGTATTCACCATGGCAAGAAAATTATTTTTTAATTTTGTTTTTAATGTTTTTATTTCTTTCCTCACACTTTGCCAAAATTTTATGTTTGGAATGCTGGGATGTATTTTAATGTTCATGCTTCTAATGTAGCTCTTGATTGTAGATTCTGGATGTGATGTGAAGTGTTCTAGAATCATCATGACTGAATGTATTAAAGCAGTTATATCCAATTCAGAAGAATCTTCTCGTGCCATCGTTTAGAAGTTAAACTCTGTCATCGTTCACAGAGCTCACAAGCATGATCAATGCGATGTTAAAATGTCCTATTGCTTTATACATTTTAAGTAAAATAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01307 GGH; gamma-glutamyl hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185922 lncRNA downstream 32908 10670248 ~ 10672026 (-) True G163644
TU185926 lncRNA downstream 75110 10626507 ~ 10629824 (-) True G163648
TU186641 lncRNA downstream 139138 10534515 ~ 10565796 (-) True G164289
TU186637 lncRNA downstream 187850 10516854 ~ 10517084 (-) True G164285
TU186636 lncRNA downstream 188254 10516448 ~ 10516680 (-) True G164284
TU186687 lncRNA upstream 31524 10747109 ~ 10756128 (-) True G164333
TU186702 lncRNA upstream 70144 10785729 ~ 10786207 (-) True G164347
TU186703 lncRNA upstream 73175 10788760 ~ 10788980 (-) True G164348
TU185984 lncRNA upstream 79445 10795030 ~ 10796442 (-) True G163699
TU186708 lncRNA upstream 141680 10857265 ~ 10857551 (-) True G164353
CI01000030_10654923_10662255.mRNA mRNA downstream 41666 10654916 ~ 10663268 (-) True CI01000030_10654923_10662255
CI01000030_10635543_10640525.mRNA mRNA downstream 64326 10635417 ~ 10640608 (-) True CI01000030_10635543_10640525
CI01000030_10592588_10595113.mRNA mRNA downstream 109632 10591754 ~ 10595302 (-) True CI01000030_10592588_10595113
CI01000030_10577987_10580431.mRNA mRNA downstream 124208 10577944 ~ 10580726 (-) True CI01000030_10577987_10580431
CI01000030_10552198_10557500.mRNA mRNA downstream 146939 10552065 ~ 10557995 (-) True CI01000030_10552198_10557500
CI01000030_10732075_10737200.mRNA mRNA upstream 15764 10731349 ~ 10737535 (-) True CI01000030_10732075_10737200
CI01000030_10771736_10772503.mRNA mRNA upstream 55958 10771543 ~ 10772780 (-) True CI01000030_10771736_10772503
CI01000030_10797691_10834282.mRNA mRNA upstream 81873 10797458 ~ 10836927 (-) True CI01000030_10797691_10834282
CI01000030_10865700_10868055.mRNA mRNA upstream 149679 10865264 ~ 10869004 (-) True CI01000030_10865700_10868055
CI01000030_10886966_10901232.mRNA mRNA upstream 171009 10886594 ~ 10904464 (-) True CI01000030_10886966_10901232
TU186031 other downstream 312755 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other downstream 338579 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274
TU186048 other downstream 384829 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186002 other downstream 583214 10121592 ~ 10121720 (-) True G163717
TU186385 other downstream 1228670 9475188 ~ 9476264 (-) True G164071
TU186808 other upstream 778753 11512598 ~ 11512682 (-) True G164443

Expression Profile