G163644


Basic Information

Item Value
gene id G163644
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10670248 ~ 10672026 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU185922
CGGGTAACCGCTGGGGTCCTGACAGCGCGGAAAAAAGCATTAGCTATAATCTGAGCAACATGTCTGGAAGAGAAGGAGGTAAAAAGAAACCCCTCAAGGCTCCCAAGAAGCAGTCAAAGGAGGTGGATGATGAGGACATGGCTTTCAAACAGAAACAGAAAGAGGAGCAGAAAGCATTGGAACAATTGAAAGCCAAGGCTGCTGGAAAAGGACCTTTAACTGGAGGTGGAATCAAGAAGTCCGGGAAGAAATGAGTGTGATTTAGTGTATATTTGCTTGCTGTTCAAATCACCAACTTATGATTTGGGTCCACAATGGCAATGTCAAATGATTTTTTTTTTAGTTACTTTATATTTCTCTTGTAAAAAAAAAGTTAAAGGAATAAAGTTTGTAATGACTGTAAATTAAAATTTCAGATTTTAATGTCTTTGATTGTGAAACATATTCATATGACATTCAAAGTTCATGACAGATCAAATGTACAATATCCAAACATTTCAAGTTTAACTTCTCATGTAAACAACTCTTATCCATCTTTATATTCAGATCTCCAGTCACACTTTTCATGCCTCCACATTTTCCATCCTCTTTGTTTAACCTAAACAAAAATGTCTTGTGTTACTGTTTCTTTTCATCCTGTGGTTTAGTTAATTTGCTGGTGCTGGTGTGTTTTGTTTATGTTTAAGCTGCTTATGTTTATTCTTCAGTTCCACCTCTACTGGATAGTGGTCACTCACTTTCAGTGTCTGTAAAGACATTAAATCTGTTTTAGTAACATACGAAACAGTCCTCAAAAAATAAACTACGTAAGTTAAATGTACAGTAACTCATGTCTTTATGATAAGTGTGATTAATGTCGAAAACCCAGTAATGGGTCTGGAATTACGTAATTATGAGCATCCTTTAATATTTTAAAGTCCTGATGAAACATTTACGGTCGTATCATTACAAAGCTTAGACTTTACACACAAAACCTTTGTTTTAAAATGTATTTTACATACAGCAGCATTTTAATGTTTACTGCAACTAAAAAGTATGTATGACTGAATGAACATTGGCAAGCCACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU185922 True 1067 lncRNA 0.35 4 10670248 10672026

Neighbor

gene id symbol gene type direction distance location
CI01000030_10654923_10662255 NA coding downstream 6980 10654916 ~ 10663268 (-)
CI01000030_10635543_10640525 NA coding downstream 29640 10635417 ~ 10640608 (-)
CI01000030_10592588_10595113 NA coding downstream 74946 10591754 ~ 10595302 (-)
CI01000030_10577987_10580431 NA coding downstream 89522 10577944 ~ 10580726 (-)
CI01000030_10552198_10557500 NA coding downstream 112253 10552065 ~ 10557995 (-)
CI01000030_10705288_10715416 NA coding upstream 32908 10704934 ~ 10715585 (-)
CI01000030_10732075_10737200 NA coding upstream 59323 10731349 ~ 10737535 (-)
CI01000030_10771736_10772503 NA coding upstream 99517 10771543 ~ 10772780 (-)
CI01000030_10797691_10834282 MYO9B coding upstream 125432 10797458 ~ 10836927 (-)
CI01000030_10865700_10868055 NA coding upstream 193238 10865264 ~ 10869004 (-)
G163648 NA non-coding downstream 40424 10626507 ~ 10629824 (-)
G164289 NA non-coding downstream 104452 10534515 ~ 10565796 (-)
G164285 NA non-coding downstream 153164 10516854 ~ 10517084 (-)
G164284 NA non-coding downstream 153568 10516448 ~ 10516680 (-)
G163757 NA non-coding downstream 161116 10506794 ~ 10509132 (-)
G164333 NA non-coding upstream 75083 10747109 ~ 10756128 (-)
G164347 NA non-coding upstream 113703 10785729 ~ 10786207 (-)
G164348 NA non-coding upstream 116734 10788760 ~ 10788980 (-)
G163699 NA non-coding upstream 123004 10795030 ~ 10796442 (-)
G164353 NA non-coding upstream 185239 10857265 ~ 10857551 (-)
CI01000030_10343879_10366274 NA other downstream 303893 10343865 ~ 10366508 (-)
CI01000030_10103451_10131419 NA other downstream 548528 10102944 ~ 10133765 (-)
G164071 NA other downstream 1193984 9475188 ~ 9476264 (-)
CI01000030_11494792_11495184 CTXN1 other upstream 822312 11494183 ~ 11495854 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020096 tma7 coding NC_007133.7 CM002906.2 5663529 ~ 5668138 (+)